RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 F2RP25116 425 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 G6PCP35575 357 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 MLLT11Q13015 90 aaPredicted RBP12.43□□□□□ -0.42
CLK3-227ENST00000570296 TSPAN14Q8NG11 270 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 OR4C16Q8NGL9 310 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 TMEM203Q969S6 136 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 MGLLQ99685 303 aa12.43□□□□□ -0.42
CLK3-227ENST00000570296 CBY3A6NI87 242 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 CLN5O75503 358 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 HNRNPCP07910 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLK3-227ENST00000570296 CALRP27797 417 aaKnown RBP12.42□□□□□ -0.42
CLK3-227ENST00000570296 ERHP84090 104 aaKnown RBP12.42□□□□□ -0.42
CLK3-227ENST00000570296 PSG9Q00887 426 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 PRCDQ00LT1 54 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 SPATA31B1PQ5VZV4 182 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 OR4B1Q8NGF8 309 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 UHRF2Q96PU4 802 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 TMEM208Q9BTX3 173 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 SCPEP1Q9HB40 452 aa12.42□□□□□ -0.42
CLK3-227ENST00000570296 A0A087WTM6 91 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 LPAR6P43657 344 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 TRAM1Q15629 374 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 ZNF79Q15937 498 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 LGALS14Q8TCE9 139 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 FCAMRQ8WWV6 532 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 BORCS5Q969J3 196 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 ATG5Q9H1Y0 275 aa12.41□□□□□ -0.42
CLK3-227ENST00000570296 M0QYG6 137 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 PSMA1P25786 263 aaKnown RBP12.4□□□□□ -0.42
CLK3-227ENST00000570296 PSMB9P28065 219 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 TSPOP30536 169 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 FXYD4P59646 89 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 DEFB1P60022 68 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 ESRGQ1W209 222 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 SIGLEC15Q6ZMC9 328 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 DAPK2Q9UIK4 370 aa12.4□□□□□ -0.42
CLK3-227ENST00000570296 TMEM235A6NFC5 223 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 CORTO00230 105 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 SSX5O60225 188 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 IGKV1-17P01599 117 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 DNAH10OSP0CZ25 163 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 GNG2P59768 71 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 NEDD8Q15843 81 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 OR4X1Q8NH49 305 aa12.39□□□□□ -0.43
CLK3-227ENST00000570296 GNPNAT1Q96EK6 184 aaPredicted RBP12.39□□□□□ -0.43
CLK3-227ENST00000570296 LRP2P98164 4655 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 IFITM5A6NNB3 132 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 OXTP01178 125 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 RORCP51449 518 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 RPS25P62851 125 aaKnown RBP12.38□□□□□ -0.43
CLK3-227ENST00000570296 RXFP4Q8TDU9 374 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 IGF2BP2-AS1Q96M15 143 aa12.38□□□□□ -0.43
CLK3-227ENST00000570296 MRPL36Q9P0J6 103 aaKnown RBP12.38□□□□□ -0.43
CLK3-227ENST00000570296 RLN1P04808 185 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 PTHLHP12272 177 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 SNCAP37840 140 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 PAX9P55771 341 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 HSPE1P61604 102 aaKnown RBP12.37□□□□□ -0.43
CLK3-227ENST00000570296 NFE4Q86UQ8 179 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 TMEM17Q86X19 198 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 BEST4Q8NFU0 473 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 OR4A16Q8NH70 328 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 LINC00052Q96N35 136 aa12.37□□□□□ -0.43
CLK3-227ENST00000570296 TRAV30A0A087WSZ9 112 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 PLAC8L1A1L4L8 177 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 ZNF705GA8MUZ8 300 aaPredicted RBP12.36□□□□□ -0.43
CLK3-227ENST00000570296 GSTZ1O43708 216 aaPredicted RBP12.36□□□□□ -0.43
CLK3-227ENST00000570296 PGLYRP1O75594 196 aaPredicted RBP12.36□□□□□ -0.43
CLK3-227ENST00000570296 ID1P41134 155 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 FCN2Q15485 313 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 TIGITQ495A1 244 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 FAM78BQ5VT40 261 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 ABHD1Q96SE0 405 aa12.36□□□□□ -0.43
CLK3-227ENST00000570296 TRAV26-1A0A087WT03 109 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 PDCD5O14737 125 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 BUB3O43684 328 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 PSMB3P49720 205 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 B2MP61769 119 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 EBLN2Q6P2I7 272 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 MRPS26Q9BYN8 205 aaKnown RBP12.35□□□□□ -0.43
CLK3-227ENST00000570296 NDUFB11Q9NX14 153 aa12.35□□□□□ -0.43
CLK3-227ENST00000570296 P0C879 139 aa12.34□□□□□ -0.43
CLK3-227ENST00000570296 M6PRP20645 277 aa12.34□□□□□ -0.43
CLK3-227ENST00000570296 OR10A3P58181 314 aa12.34□□□□□ -0.43
CLK3-227ENST00000570296 COQ8AQ8NI60 647 aa12.34□□□□□ -0.43
CLK3-227ENST00000570296 Q8WTZ3 238 aa12.34□□□□□ -0.43
CLK3-227ENST00000570296 INS-IGF2F8WCM5 200 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 H3BNG1 76 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 SCGNO76038 276 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 PRM2P04554 102 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 OPRK1P41145 380 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 RPL5P46777 297 aaKnown RBP12.33□□□□□ -0.44
CLK3-227ENST00000570296 SUB1P53999 127 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLK3-227ENST00000570296 HOGA1Q86XE5 327 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 RNF125Q96EQ8 232 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 SSR3Q9UNL2 185 aa12.33□□□□□ -0.44
CLK3-227ENST00000570296 A0A0J9YX75 114 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 A8MTW9 85 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 SIVA1O15304 175 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 INSP01308 110 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms