RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 C22orf24Q9Y442 160 aa0.63□□□□□ -2.31
SCFD1-218ENST00000556256 DLG5Q8TDM6 1919 aa0.63□□□□□ -2.31
SCFD1-218ENST00000556256 HEATR5BQ9P2D3 2071 aa0.63□□□□□ -2.31
SCFD1-218ENST00000556256 ADGRB2O60241 1585 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 KIF13BQ9NQT8 1826 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 hCG_1818297A0A087WSY0 165 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 A0A087WX48 190 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 TRAV12-1A0A0B4J245 112 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 A8MT66 165 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 TMEM114B3SHH9 223 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 PDE6DO43924 150 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 C8GP07360 202 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 OR4E1P0C645 316 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 PPIBP23284 216 aaKnown RBP0.62□□□□□ -2.31
SCFD1-218ENST00000556256 S100A4P26447 101 aaKnown RBP0.62□□□□□ -2.31
SCFD1-218ENST00000556256 YPEL3P61236 119 aaPredicted RBP0.62□□□□□ -2.31
SCFD1-218ENST00000556256 CNBPP62633 177 aaKnown RBP0.62□□□□□ -2.31
SCFD1-218ENST00000556256 Q6Q795 121 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 TRAPPC6BQ86SZ2 158 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 OOSP2Q86WS3 158 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 KRT222Q8N1A0 295 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 WFDC5Q8TCV5 224 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 ZNF418Q8TF45 676 aaPredicted RBP0.62□□□□□ -2.31
SCFD1-218ENST00000556256 PPP1R14BQ96C90 147 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 GPR146Q96CH1 333 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 TRIM4Q9C037 500 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 FBXO5Q9UKT4 447 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 EPDR1Q9UM22 224 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 MICAL3Q7RTP6 2002 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 TECTAO75443 2155 aa0.62□□□□□ -2.31
SCFD1-218ENST00000556256 A0A087X0T9 212 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 IGKV1-9A0A0C4DH69 117 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 M0R2N4 97 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 HYPMO75409 117 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 E2F6O75461 281 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 CASP1P29466 404 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 RAB4BP61018 213 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 PRB3Q04118 309 aaPredicted RBP0.61□□□□□ -2.31
SCFD1-218ENST00000556256 RNASE10Q5GAN6 216 aaKnown RBP0.61□□□□□ -2.31
SCFD1-218ENST00000556256 OR51A2Q8NGJ7 313 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 PARVBQ9HBI1 364 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 NHP2Q9NX24 153 aaKnown RBP0.61□□□□□ -2.31
SCFD1-218ENST00000556256 TVP23BQ9NYZ1 205 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 ARFGEF3Q5TH69 2177 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 ALPK2Q86TB3 2170 aa0.61□□□□□ -2.31
SCFD1-218ENST00000556256 MED1Q15648 1581 aaPredicted RBP0.61□□□□□ -2.31
SCFD1-218ENST00000556256 RTL1A6NKG5 1358 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 C7orf71A4D174 169 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 SMIM17P0DL12 118 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 MGST1P10620 155 aaKnown RBP0.6□□□□□ -2.31
SCFD1-218ENST00000556256 CYBAP13498 195 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 SRIP30626 198 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 ZNF93P35789 620 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-218ENST00000556256 AP3S2P59780 193 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 FADDQ13158 208 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 TSNQ15631 228 aaKnown RBP0.6□□□□□ -2.31
SCFD1-218ENST00000556256 DEFB115Q30KQ5 88 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 DEFB113Q30KQ7 82 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 OR8D4Q8NGM9 314 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 SLC25A40Q8TBP6 338 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 SFT2D1Q8WV19 159 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 LINC00526Q96FQ7 95 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 OBSCN-AS1Q96MR7 158 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 ZFP30Q9Y2G7 519 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 CCDC88AQ3V6T2 1871 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 DOCK5Q9H7D0 1870 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 RP1P56715 2156 aa0.6□□□□□ -2.31
SCFD1-218ENST00000556256 MACF1Q9UPN3 7388 aaKnown RBP0.59□□□□□ -2.31
SCFD1-218ENST00000556256 TRAV3A0A0B4J244 114 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 TRAV4A0A0B4J268 109 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 J3QRK9 145 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 INE1O15225 51 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 OR7C1O76099 320 aaPredicted RBP0.59□□□□□ -2.31
SCFD1-218ENST00000556256 S100A6P06703 90 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 RNASE4P34096 147 aaKnown RBP0.59□□□□□ -2.31
SCFD1-218ENST00000556256 C1orf137Q5JT78 98 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 BRMS1LQ5PSV4 323 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 C3orf56Q8N813 242 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 OR11H6Q8NGC7 330 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 HIST1H2BLQ99880 126 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 MRPL57Q9BQC6 102 aaKnown RBP0.59□□□□□ -2.31
SCFD1-218ENST00000556256 KLK9Q9UKQ9 250 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 SLC35A3Q9Y2D2 325 aa0.59□□□□□ -2.31
SCFD1-218ENST00000556256 POLEQ07864 2286 aa0.59□□□□□ -2.32
SCFD1-218ENST00000556256 TNRC6BQ9UPQ9 1833 aaKnown RBP0.59□□□□□ -2.32
SCFD1-218ENST00000556256 ANAPC1Q9H1A4 1944 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 TRBV6-7A0A0A0MS04 114 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 TRBV6-8A0A0A6YYG3 113 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 FAM159BA6NKW6 160 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 SULT1B1O43704 296 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 ESRGQ1W209 222 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 Q8IYB0 196 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 Q8N814 137 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 SIGMAR1Q99720 223 aa0.58□□□□□ -2.32
SCFD1-218ENST00000556256 SYNE2Q8WXH0 6885 aaKnown RBP0.58□□□□□ -2.32
SCFD1-218ENST00000556256 ZNF106Q9H2Y7 1883 aaKnown RBP0.57□□□□□ -2.32
SCFD1-218ENST00000556256 C1orf196B1AJZ1 125 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 CYB5BO43169 146 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 PROSCO94903 275 aa0.57□□□□□ -2.32
SCFD1-218ENST00000556256 IFNA6P05013 189 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms