RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR51I1Q9H343 314 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 PARP11Q9NR21 331 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 ENPP5Q9UJA9 477 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 ERGIC3Q9Y282 383 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 LINC00588Q9Y4M8 146 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 AMMECR1Q9Y4X0 333 aaPredicted RBP2.15□□□□□ -2.07
CD44-235ENST00000532339 LINC00312Q9Y6C7 94 aa2.15□□□□□ -2.07
CD44-235ENST00000532339 IGKV2D-24A0A075B6R9 120 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TRAV8-4A0A0B4J246 113 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 SPRR5A0A1B0GTR4 108 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 A0A1W2PRG6 482 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 C2orf70A6NJV1 201 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 RFPL4AA6NLU0 287 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TMEM210A6NLX4 147 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 RFPL4AL1F8VTS6 287 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 J3QT63 122 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 M0QX08 132 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 GATCO43716 136 aaKnown RBP2.14□□□□□ -2.07
CD44-235ENST00000532339 P01737 135 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 APOA1P02647 267 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 OR5AL1P0C617 328 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 CTLA4P16410 223 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 BLVRBP30043 206 aaPredicted RBP2.14□□□□□ -2.07
CD44-235ENST00000532339 EDDM3BP56851 147 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ACOT6Q3I5F7 207 aaPredicted RBP2.14□□□□□ -2.07
CD44-235ENST00000532339 LIN52Q52LA3 116 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TEX30Q5JUR7 227 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TMEM69Q5SWH9 247 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ZFP1Q6P2D0 407 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 FAHD1Q6P587 224 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ZNF773Q6PK81 442 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 CLEC19AQ6UXS0 136 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ANGPTL5Q86XS5 388 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 SLC7A5P1Q8MH63 180 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 NATD1Q8N6N6 113 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 OR1L1Q8NH94 360 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ZFAND1Q8TCF1 268 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 CDKL2Q92772 493 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 L3HYPDHQ96EM0 354 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 SLC35G5Q96KT7 338 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TRNT1Q96Q11 434 aaKnown RBP2.14□□□□□ -2.07
CD44-235ENST00000532339 RBP7Q96R05 134 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 HDHD2Q9H0R4 259 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 ZNF286AQ9HBT8 521 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 EXOSC4Q9NPD3 245 aaKnown RBP2.14□□□□□ -2.07
CD44-235ENST00000532339 ZNF586Q9NXT0 402 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 RASL12Q9NYN1 266 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TFR2Q9UP52 801 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 TIMM22Q9Y584 194 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 DSCAML1Q8TD84 2053 aa2.14□□□□□ -2.07
CD44-235ENST00000532339 IGHV6-1A0A0B4J1U7 121 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 FAM240AA0A1B0GVK7 77 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 A0A1B0GWA3 101 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 ZNF593O00488 134 aaPredicted RBP2.13□□□□□ -2.07
CD44-235ENST00000532339 MYL12BO14950 172 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CCDC22O60826 627 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 HLA-DRB1P01911 266 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 HLA-DQB1P01920 261 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 TRGV3P03979 118 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 SPART-AS1P0CW21 52 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CBLN1P23435 193 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CASQ1P31415 396 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 MAP2K4P45985 399 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 MTPNP58546 118 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 MYL5Q02045 173 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 TMEM267Q0VDI3 215 aaPredicted RBP2.13□□□□□ -2.07
CD44-235ENST00000532339 EIF4EBP1Q13541 118 aaPredicted RBP2.13□□□□□ -2.07
CD44-235ENST00000532339 DIAPH2-AS1Q14236 149 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 IMPG1Q17R60 797 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 SMIM21Q3B7S5 101 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 C5orf47Q569G3 176 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CD200R1LQ6Q8B3 271 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 HEPN1Q6WQI6 88 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 SSX7Q7RTT5 188 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 FAM19A1Q7Z5A9 133 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 UBL4BQ8N7F7 174 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 YIPF7Q8N8F6 280 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 OR5T1Q8NG75 326 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 OR8B12Q8NGG6 310 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 OR4D6Q8NGJ1 314 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 SLC35B4Q969S0 331 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 SLC25A46Q96AG3 418 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 ADTRPQ96IZ2 230 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 Q96MT0 163 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 GPR22Q99680 433 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 NAPGQ99747 312 aaPredicted RBP2.13□□□□□ -2.07
CD44-235ENST00000532339 RTL8AQ9BWD3 113 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CST11Q9H112 138 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 VCX3AQ9NNX9 186 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 RHBDL2Q9NX52 303 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 CLEC2DQ9UHP7 191 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 LRRC42Q9Y546 428 aa2.13□□□□□ -2.07
CD44-235ENST00000532339 IGKV2-28A0A075B6P5 120 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 IGHV3-49A0A0A0MS15 119 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 TRAV3A0A0B4J244 114 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 TRAV8-6A0A0B4J262 113 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 IGHV1-3A0A0C4DH29 117 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 RAB19A4D1S5 217 aa2.12□□□□□ -2.07
CD44-235ENST00000532339 MIF4GDA9UHW6 222 aaKnown RBP2.12□□□□□ -2.07
CD44-235ENST00000532339 F5H5K5 113 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms