RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 ZNF439Q8NDP4 499 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 BTF3L4Q96K17 158 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 IL20Q9NYY1 176 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 SAMHD1Q9Y3Z3 626 aaKnown RBP1.65□□□□□ -2.15
USP53-204ENST00000507906 ARL5AQ9Y689 179 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 MAP2P11137 1827 aaKnown RBP1.65□□□□□ -2.15
USP53-204ENST00000507906 KIF13AQ9H1H9 1805 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 SPHKAPQ2M3C7 1700 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 USP32Q8NFA0 1604 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 MAGI3Q5TCQ9 1506 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 TOPBP1Q92547 1522 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 DOCK5Q9H7D0 1870 aa1.65□□□□□ -2.15
USP53-204ENST00000507906 QRICH2Q9H0J4 1663 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 IQGAP2Q13576 1575 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 MYH7BA7E2Y1 1941 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 PTPRSQ13332 1948 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 ERCC6Q03468 1493 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 ABCC10Q5T3U5 1492 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 ANKRD30AQ9BXX3 1397 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 IFT172Q9UG01 1749 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 S1PR2O95136 353 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 C8GP07360 202 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 RBP1P09455 135 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 TRGC1P0CF51 173 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 CRYGAP11844 174 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 EMP1P54849 157 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 SARNPP82979 210 aaKnown RBP1.64□□□□□ -2.15
USP53-204ENST00000507906 SPANXN3Q5MJ09 141 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 LYG2Q86SG7 212 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 DNAJC9Q8WXX5 260 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 AP3S1Q92572 193 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 HOPXQ9BPY8 73 aaPredicted RBP1.64□□□□□ -2.15
USP53-204ENST00000507906 CCDC90BQ9GZT6 254 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 EIF2AK4Q9P2K8 1649 aaKnown RBP1.64□□□□□ -2.15
USP53-204ENST00000507906 HMGXB3Q12766 1538 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 KIAA0586Q9BVV6 1533 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 CASKIN1Q8WXD9 1431 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 DNMBPQ6XZF7 1577 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 UGGT1Q9NYU2 1555 aa1.64□□□□□ -2.15
USP53-204ENST00000507906 INO80Q9ULG1 1556 aaPredicted RBP1.64□□□□□ -2.15
USP53-204ENST00000507906 CCDC141Q6ZP82 1450 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 DDX60Q8IY21 1712 aaKnown RBP1.63□□□□□ -2.15
USP53-204ENST00000507906 RTL1A6NKG5 1358 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 IQGAP3Q86VI3 1631 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 CC2D2AQ9P2K1 1620 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 TRAV4A0A0B4J268 109 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 TRAPPC13A5PLN9 417 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MEIS3P1A6NDR6 274 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 IBA57-AS1B1ANH7 110 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 OR5F1O95221 314 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 C1QBP02746 253 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 LINC01554Q52M75 96 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 GOLT1AQ6ZVE7 132 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 SLC36A1Q7Z2H8 476 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 OR11H6Q8NGC7 330 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MCFD2Q8NI22 146 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 WFDC5Q8TCV5 224 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 ERGIC3Q9Y282 383 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MALRD1Q5VYJ5 2156 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MYH9P35579 1960 aaKnown RBP1.63□□□□□ -2.15
USP53-204ENST00000507906 ARHGEF28Q8N1W1 1705 aaKnown RBP1.63□□□□□ -2.15
USP53-204ENST00000507906 PARP4Q9UKK3 1724 aaKnown RBP1.63□□□□□ -2.15
USP53-204ENST00000507906 MYO5AQ9Y4I1 1855 aaKnown RBP1.63□□□□□ -2.15
USP53-204ENST00000507906 FANCAO15360 1455 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MED14O60244 1454 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MYOM2P54296 1465 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 MAGI2Q86UL8 1455 aa1.63□□□□□ -2.15
USP53-204ENST00000507906 PREX2Q70Z35 1606 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 MYO3AQ8NEV4 1616 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 URB2Q14146 1524 aaKnown RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 LMTK2Q8IWU2 1503 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 IGKV1-9A0A0C4DH69 117 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 H3BQF6 201 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 PPIBP23284 216 aaKnown RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 MAGEA12P43365 314 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 ATP5G3P48201 142 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 Q6Q795 121 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 LCA10Q71F78 164 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 MIR17HGQ75NE6 70 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 EXOC3-AS1Q8N2X6 119 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 ADAT3Q96EY9 351 aaPredicted RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 ZNF625Q96I27 306 aaPredicted RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 SCGB3A1Q96QR1 104 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 PARVBQ9HBI1 364 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 MED29Q9NX70 200 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 SS18L2Q9UHA2 77 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 BAIAP2Q9UQB8 552 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 YTHDC2Q9H6S0 1430 aaKnown RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 GLI2P10070 1586 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 GLI3P10071 1580 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 PLXNA3P51805 1871 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 CCDC88AQ3V6T2 1871 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 BAHCC1Q9P281 2608 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 CCDC171Q6TFL3 1326 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 FANCD2Q9BXW9 1451 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 WDR7Q9Y4E6 1490 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 TARBP1Q13395 1621 aaKnown RBP1.62□□□□□ -2.15
USP53-204ENST00000507906 ABCA9Q8IUA7 1624 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 MADDQ8WXG6 1647 aa1.62□□□□□ -2.15
USP53-204ENST00000507906 A0A1B0GUL6 1792 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms