RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 PFDN5Q99471 154 aa7.54□□□□□ -1.2
USP54-214ENST00000492357 GGTLC1Q9BX51 225 aa7.54□□□□□ -1.2
USP54-214ENST00000492357 ESM1Q9NQ30 184 aa7.54□□□□□ -1.2
USP54-214ENST00000492357 SERTAD4Q9NUC0 356 aa7.54□□□□□ -1.2
USP54-214ENST00000492357 SONP18583 2426 aaKnown RBP7.53□□□□□ -1.2
USP54-214ENST00000492357 ELOA3CA0A087WX78 387 aaPredicted RBP7.53□□□□□ -1.2
USP54-214ENST00000492357 ZFP92A6NM28 416 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 LINC01548A6NM66 108 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 GNG7O60262 68 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 TRGV3P03979 118 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 M6PRP20645 277 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 OR10J1P30954 320 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 RAB9AP51151 201 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 NDUFA5Q16718 116 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 C15orf32Q32M92 178 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 TMEM41BQ5BJD5 291 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 ALKAL2Q6UX46 152 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 CYP2G1PQ6ZSU1 146 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 OR1L4Q8NGR5 311 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 OR4F5Q8NH21 305 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 TMED6Q8WW62 240 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 NPIPB3Q92617 1050 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 ACY3Q96HD9 319 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 UBE2E2Q96LR5 201 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 MGST2Q99735 147 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 MRPL32Q9BYC8 188 aaKnown RBP7.53□□□□□ -1.2
USP54-214ENST00000492357 TNFRSF19Q9NS68 423 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 ZNF355PQ9NSJ1 428 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 MED9Q9NWA0 146 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 PFDN2Q9UHV9 154 aa7.53□□□□□ -1.2
USP54-214ENST00000492357 IGKV1D-37A0A075B6S9 117 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 IGKV1OR2-108A0A075B7D4 117 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 TRAV1-1A0A0B4J248 108 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 SEC14L6B5MCN3 397 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 NUPL2O15504 423 aaKnown RBP7.52□□□□□ -1.21
USP54-214ENST00000492357 OR2J3O76001 311 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 NDUFB8O95169 186 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 OR2C1O95371 312 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 TOMM40O96008 361 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 HBE1P02100 147 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 APELAP0DMC3 54 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 RAB2AP61019 212 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 B2MP61769 119 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 RELQ04864 619 aaPredicted RBP7.52□□□□□ -1.21
USP54-214ENST00000492357 PMS2P11Q13670 270 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 ZNF343Q6P1L6 599 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 OR4X2Q8NGF9 303 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 WIPF2Q8TF74 440 aaPredicted RBP7.52□□□□□ -1.21
USP54-214ENST00000492357 GSX1Q9H4S2 264 aaPredicted RBP7.52□□□□□ -1.21
USP54-214ENST00000492357 SLC39A9Q9NUM3 307 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 PXMP4Q9Y6I8 212 aa7.52□□□□□ -1.21
USP54-214ENST00000492357 SETXQ7Z333 2677 aaKnown RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 SH2D7A6NKC9 451 aaPredicted RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 NDUFS6O75380 124 aaKnown RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 IGKV1-17P01599 117 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 CTSGP08311 255 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 PF4V1P10720 104 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 TAGLN2P37802 199 aaKnown RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 CDX1P47902 265 aaPredicted RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 TPPP2P59282 170 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 RHOBP62745 196 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 RUNX1Q01196 453 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 Q56UQ5 140 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 OXLD1Q5BKU9 147 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 ZNF600Q6ZNG1 722 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 STPG3Q8N7X2 389 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 STXBP6Q8NFX7 210 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 OR51G1Q8NGK1 321 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 LYPD6BQ8NI32 183 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 Q8WTZ3 238 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 MBD3L1Q8WWY6 194 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 NOL4LQ96MY1 436 aaPredicted RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 RSG1Q9BU20 258 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 ACTR3CQ9C0K3 210 aaPredicted RBP7.51□□□□□ -1.21
USP54-214ENST00000492357 PGPEP1Q9NXJ5 209 aa7.51□□□□□ -1.21
USP54-214ENST00000492357 ZNF469Q96JG9 3925 aaPredicted RBP7.5□□□□□ -1.21
USP54-214ENST00000492357 MTORP42345 2549 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 CTXND1A0A1B0GTU2 59 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 CLPSL1A2RUU4 121 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 ANKRD34BA5PLL1 514 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 MFSD2BA6NFX1 497 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 F8W735 103 aaPredicted RBP7.5□□□□□ -1.21
USP54-214ENST00000492357 TGOLN2O43493 480 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 PRH1P02810 166 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 NMBP08949 121 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 LINC00869P0C866 280 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 RD3LP0DJH9 198 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 PPT1P50897 306 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 ZNF616Q08AN1 781 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 FFAR4Q5NUL3 377 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 Q6ZS46 218 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 KLHDC1Q8N7A1 406 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 ZNF491Q8N8L2 437 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 OR10G4Q8NGN3 311 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 OR10G9Q8NGN4 311 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 OR10G7Q8NGN6 311 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 LINC01006Q8NI28 216 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 SH3BGRL3Q9H299 93 aa7.5□□□□□ -1.21
USP54-214ENST00000492357 ARL2-SNX15V9GYD0 113 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms