RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 C11orf40Q8WZ69 217 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 CMSS1Q9BQ75 279 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 MRPL32Q9BYC8 188 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ENY2Q9NPA8 101 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ERGIC3Q9Y282 383 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ARL2BPQ9Y2Y0 163 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 FAM32AQ9Y421 112 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 NESP48681 1621 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ARFGEF3Q5TH69 2177 aa0.7□□□□□ -2.3
CPSF3-205ENST00000489629 TNRC6AQ8NDV7 1962 aaKnown RBP0.7□□□□□ -2.3
CPSF3-205ENST00000489629 ARHGEF28Q8N1W1 1705 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 NUP210LQ5VU65 1888 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MYO5AQ9Y4I1 1855 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MYO18BQ8IUG5 2567 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 ZNF292O60281 2723 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 UTRNP46939 3433 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 GCN1Q92616 2671 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 BRWD1Q9NSI6 2320 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 LRP5O75197 1615 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 TRAV4A0A0B4J268 109 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 TRBV6-5A0A0K0K1A5 114 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 C1orf196B1AJZ1 125 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 C1QBP02746 253 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 HTR1AP08908 422 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 RBP1P09455 135 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MAGEA12P43365 314 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 ATP5G3P48201 142 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MRPS25P82663 173 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 SPA17Q15506 151 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 LIN52Q52LA3 116 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 AKIRIN2Q53H80 203 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 TEX36Q5VZQ5 186 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 DHRS4L2Q6PKH6 230 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 Q6ZSA8 131 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 KRT222Q8N1A0 295 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 TMEM86AQ8N2M4 240 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 EXOC3-AS1Q8N2X6 119 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 SIGLECL1Q8N7X8 197 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 C3orf56Q8N813 242 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 WFDC11Q8NEX6 87 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MCFD2Q8NI22 146 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 AQP3Q92482 292 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 SCGB3A1Q96QR1 104 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 NAA38Q9BRA0 125 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 KIFC1Q9BW19 673 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 CCDC94Q9BW85 323 aaPredicted RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 CCDC90BQ9GZT6 254 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 SLC39A9Q9NUM3 307 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 ARMC1Q9NVT9 282 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 HELZ2Q9BYK8 2649 aaKnown RBP0.69□□□□□ -2.3
CPSF3-205ENST00000489629 NCOA1Q15788 1441 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 ABCA2Q9BZC7 2435 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 SBF1O95248 1867 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 PLXNA4Q9HCM2 1894 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 MYO9AB2RTY4 2548 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 ALPK2Q86TB3 2170 aa0.69□□□□□ -2.3
CPSF3-205ENST00000489629 TNRC6BQ9UPQ9 1833 aaKnown RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 TRAV3A0A0B4J244 114 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 IGKV2-29A2NJV5 120 aaPredicted RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 TRAPPC13A5PLN9 417 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 BDP1A6H8Y1 2624 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 SDCBPO00560 298 aaPredicted RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 OR5F1O95221 314 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 IFNA10P01566 189 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 ASAH2BP0C7U1 165 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 PPIBP23284 216 aaKnown RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 NFYAP23511 347 aaPredicted RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 G0S2P27469 103 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 RNASE4P34096 147 aaKnown RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 ZNF826PQ6ZT77 177 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 GOLT1AQ6ZVE7 132 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 HIST3H2BBQ8N257 126 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 Q8N2B8 174 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 PXT1Q8NFP0 134 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 OR8D4Q8NGM9 314 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 MBD3L1Q8WWY6 194 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 GINS4Q9BRT9 223 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 CYSTM1Q9H1C7 97 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 TMEM133Q9H2Q1 129 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 CST9LQ9H4G1 147 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 NMNAT1Q9HAN9 279 aaPredicted RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 PARVBQ9HBI1 364 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 OSTCQ9NRP0 149 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 MED29Q9NX70 200 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 OPTCQ9UBM4 332 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 CKLFQ9UBR5 152 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 DNHD1Q96M86 4753 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 CASP8AP2Q9UKL3 1982 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 SZT2Q5T011 3432 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 HMGXB3Q12766 1538 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 PIEZO1Q92508 2521 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 NCOA6Q14686 2063 aaPredicted RBP0.68□□□□□ -2.3
CPSF3-205ENST00000489629 LAMB4A4D0S4 1761 aa0.68□□□□□ -2.3
CPSF3-205ENST00000489629 CELSR3Q9NYQ7 3312 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 PTPN13Q12923 2485 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 BPTFQ12830 3046 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 ARAP1Q96P48 1450 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 UNC80Q8N2C7 3258 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 MEIKINA0A087WXM9 373 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 TRAV1-1A0A0B4J248 108 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms