RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	PLEKHA3	Q9HB20	300 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	MCUB	Q9NWR8	336 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	GAR1	Q9NY12	217 aa	Known RBP	4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	CACNG5	Q9UF02	275 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	TBC1D24	Q9ULP9	559 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	FLVCR2	Q9UPI3	526 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	TMED3	Q9Y3Q3	217 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	SMAD5-AS1	Q9Y6J3	95 aa		4.28	□□□□□ -1.72
CUX1-208	ENST00000485792	VPS13D	Q5THJ4	4388 aa		4.28	□□□□□ -1.73
CUX1-208	ENST00000485792	IGHV3-35	A0A0C4DH35	117 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	C9orf170	A2RU37	121 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	OR2T8	A6NH00	312 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	TSPAN4	O14817	238 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	CLN5	O75503	358 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	SCAF4	O95104	1147 aa	Known RBP	4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	AKR1C4	P17516	323 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	IL15RA	Q13261	267 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	DHRS2	Q13268	280 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	LCE4A	Q5TA78	99 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	PRSS54	Q6PEW0	395 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	PLET1	Q6UQ28	207 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	TMEM61	Q8N0U2	210 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	CENPS	Q8N2Z9	138 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	MITD1	Q8WV92	249 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	VSIR	Q9H7M9	311 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	DAZ1	Q9NQZ3	744 aa	Known RBP	4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	BATF3	Q9NR55	127 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	PTTG2	Q9NZH5	202 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792		U3KQ87	197 aa		4.27	□□□□□ -1.73
CUX1-208	ENST00000485792	DNAH6	Q9C0G6	4158 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	IGKV1D-37	A0A075B6S9	117 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	PMS2P5	A8MQ11	134 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	LYRM1	O43325	122 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	IFNA17	P01571	189 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	TCRB	P04435	133 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	OR4E1	P0C645	316 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	FRMD6-AS1	P0C7T7	363 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	IGLC1	P0CG04	106 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	IGHV4-30-4	P0DP06	118 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	ANXA3	P12429	323 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	HOXA5	P20719	270 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	CRYBB3	P26998	211 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	GPX4	P36969	197 aa	Predicted RBP	4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	SNCA	P37840	140 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	NPBWR1	P48145	328 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	SUB1	P53999	127 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	PAX9	P55771	341 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	YPEL3	P61236	119 aa	Predicted RBP	4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	ASAH1	Q13510	395 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	ZNF57	Q68EA5	555 aa	Predicted RBP	4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	LCN12	Q6JVE5	192 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	TOMM20L	Q6UXN7	152 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	LYG2	Q86SG7	212 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	SBSPON	Q8IVN8	264 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	UXS1	Q8NBZ7	420 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	DUSP18	Q8NEJ0	188 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	OR4D5	Q8NGN0	318 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	S100Z	Q8WXG8	99 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	C17orf77	Q96MU5	243 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	HINT2	Q9BX68	163 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	RBKS	Q9H477	322 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	C11orf1	Q9H5F2	150 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	RETN	Q9HD89	108 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	PALMD	Q9NP74	551 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	SMPX	Q9UHP9	88 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	UFC1	Q9Y3C8	167 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	KMT2A	Q03164	3969 aa		4.26	□□□□□ -1.73
CUX1-208	ENST00000485792	IGKV1OR2-108	A0A075B7D4	117 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	IGHV7-4-1	A0A0J9YVY3	117 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	CHEK1	O14757	476 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	NUPL2	O15504	423 aa	Known RBP	4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	CCNK	O75909	580 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	LY86	O95711	162 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	APOH	P02749	345 aa	Predicted RBP	4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	CD7	P09564	240 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	SLC25A4	P12235	298 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	REL	Q04864	619 aa	Predicted RBP	4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	CD69	Q07108	199 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	DEFB121	Q5J5C9	76 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	GGNBP1	Q5YKI7	109 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	TRIQK	Q629K1	86 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	ZNF600	Q6ZNG1	722 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	FAM24B	Q8N5W8	94 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	SLC24A4	Q8NFF2	622 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	OR52B4	Q8NGK2	314 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	DTD1	Q8TEA8	209 aa		4.25	□□□□□ -1.73
CUX1-208	ENST00000485792	TRAV30	A0A087WSZ9	112 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	TRAV2	A0A0B4J234	112 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	ZNF320	A2RRD8	509 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	RBMY1B	A6NDE4	496 aa	Known RBP	4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	RBMY1E	A6NEQ0	496 aa	Known RBP	4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	CENPX	A8MT69	81 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	SYNGR2	O43760	224 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	GNG7	O60262	68 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	ADAP1	O75689	374 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	UPK1B	O75841	260 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	IL5	P05113	134 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	CD5	P06127	495 aa		4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	RBMY1D	P0C7P1	496 aa	Known RBP	4.24	□□□□□ -1.73
CUX1-208	ENST00000485792	ANXA7	P20073	488 aa	Known RBP	4.24	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms