RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CA7P43166 264 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 UBE2AP49459 152 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 KIAA0040Q15053 153 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 PDGFRLQ15198 375 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 CST6Q15828 149 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 PYY3Q5JQD4 70 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 CEND1Q8N111 149 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SUMF2Q8NBJ7 301 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 OR4C16Q8NGL9 310 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF721Q8TF20 911 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 LCN9Q8WX39 176 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 DEDD2Q8WXF8 326 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SLC25A21Q9BQT8 299 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 RTL8AQ9BWD3 113 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 C1QTNF6Q9BXI9 259 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 RERGLQ9H628 205 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 TAAR3PQ9P1P4 343 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 PCTPQ9UKL6 214 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 USP54Q70EL1 1684 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 BAZ2AQ9UIF9 1905 aaKnown RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 TP53BP1Q12888 1972 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 RANBP2P49792 3224 aaKnown RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV5-51A0A0C4DH38 117 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV5-10-1A0A0J9YXX1 117 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 LOC107984640A0A0U1RRK4 108 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MEIS3P1A6NDR6 274 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 GGT3PA6NGU5 568 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 A8MUN3 132 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SRRM5B3KS81 715 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 GGTLC3B5MD39 225 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 GABARAPH6UMI1 98 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 J3QQQ9 107 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MPC2O95563 127 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MT-ND4LP03901 98 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IGLC6P0CF74 106 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 NDUFA6P56556 154 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 LYZP61626 148 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 FKBP1AP62942 108 aaKnown RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 EIF3IQ13347 325 aaKnown RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 RNASE13Q5GAN3 156 aaKnown RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SPANXN3Q5MJ09 141 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 ZC2HC1BQ5TFG8 222 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM244Q5VVB8 128 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 Q5XG85 94 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 Q6Q795 121 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 GKN2Q86XP6 184 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 ORMDL3Q8N138 153 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MMGT1Q8N4V1 131 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 C14orf178Q8N769 122 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 SGMS2Q8NHU3 365 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 LINC01006Q8NI28 216 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 BORCS8Q96FH0 119 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 CARD19Q96LW7 228 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 C1orf147Q96MC9 270 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 ERMAPQ96PL5 475 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 GINS4Q9BRT9 223 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 DERL1Q9BUN8 251 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 IMUPQ9GZP8 106 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MED9Q9NWA0 146 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 AK3Q9UIJ7 227 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 MOB4Q9Y3A3 225 aa2.85□□□□□ -1.95
HMGB1-204ENST00000399489 AMMECR1Q9Y4X0 333 aaPredicted RBP2.85□□□□□ -1.95
HMGB1-204ENST00000399489 KTN1Q86UP2 1357 aaKnown RBP2.84□□□□□ -1.95
HMGB1-204ENST00000399489 MEGF6O75095 1541 aa2.84□□□□□ -1.95
HMGB1-204ENST00000399489 TNRC6CQ9HCJ0 1690 aaKnown RBP2.84□□□□□ -1.95
HMGB1-204ENST00000399489 KIF13BQ9NQT8 1826 aa2.84□□□□□ -1.95
HMGB1-204ENST00000399489 DOCK3Q8IZD9 2030 aa2.84□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV7-4-1A0A0J9YVY3 117 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 ZFP92A6NM28 416 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 H0YJW9 148 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 LST1O00453 97 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 NCR2O95944 276 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV1-8P0DP01 117 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 HLA-EP13747 358 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 HIST1H1DP16402 221 aaKnown RBP2.84□□□□□ -1.96
HMGB1-204ENST00000399489 KRTAP10-3P60369 221 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 MYL5Q02045 173 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 ATP5G2Q06055 141 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 RTL8BQ17RB0 113 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 VMA21Q3ZAQ7 101 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 AMMECR1LQ6DCA0 310 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 MORN3Q6PF18 240 aaPredicted RBP2.84□□□□□ -1.96
HMGB1-204ENST00000399489 KRTAP7-1Q8IUC3 87 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 RTN4IP1Q8WWV3 396 aaPredicted RBP2.84□□□□□ -1.96
HMGB1-204ENST00000399489 OR4C12Q96R67 309 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 PYGO2Q9BRQ0 406 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 TSSK6Q9BXA6 273 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 PRO1933Q9H354 126 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 RPP21Q9H633 154 aaKnown RBP2.84□□□□□ -1.96
HMGB1-204ENST00000399489 FBXL12Q9NXK8 326 aa2.84□□□□□ -1.96
HMGB1-204ENST00000399489 COL6A3P12111 3177 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 MUC3AQ02505 3323 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 A0A1B0GVX0 72 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF670-ZNF695F2Z2N8 137 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 COX7A2LO14548 114 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 LYZL6O75951 148 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 TRAPPC2P0DI81 140 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 TRAPPC2BP0DI82 140 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF728P0DKX0 622 aa2.83□□□□□ -1.96
HMGB1-204ENST00000399489 P0DMU3 169 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms