RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PGPA6NDG6 321 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 HOXC12P31275 282 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 TEX45Q8NA69 505 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 GTSF1Q8WW33 167 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 PILRBQ9UKJ0 227 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 FAM231BA6NCW3 169 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 TMEM238C9JI98 176 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 J3QW42 95 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 CHEK1O14757 476 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 CD5LO43866 347 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 RNASE2P10153 161 aaKnown RBP12.87□□□□□ -0.35
CKAP4-201ENST00000378026 ORM2P19652 201 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 ARF6P62330 175 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 CD69Q07108 199 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 NPIPB3Q92617 1050 aa12.87□□□□□ -0.35
CKAP4-201ENST00000378026 PEF1Q9UBV8 284 aaKnown RBP12.87□□□□□ -0.35
CKAP4-201ENST00000378026 BOD1L1Q8NFC6 3051 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 A0A1B0GXF2 115 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 MOSP00540 346 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 TMEM177Q53S58 311 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 TMUB1Q9BVT8 246 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 UPK2O00526 184 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 CRXO43186 299 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-201ENST00000378026 RNFT1Q5M7Z0 435 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 PATE2Q6UY27 113 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 TMEM116Q8NCL8 245 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 MAFAQ8NHW3 353 aaPredicted RBP12.86□□□□□ -0.35
CKAP4-201ENST00000378026 ZNF835Q9Y2P0 537 aa12.86□□□□□ -0.35
CKAP4-201ENST00000378026 KLK10O43240 276 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 PPP1R35Q8TAP8 253 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 C19orf24Q9BVV8 132 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 E7EUB6 86 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 F2RL2O00254 374 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 P01737 135 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 HIST1H1AQ02539 215 aaPredicted RBP12.85□□□□□ -0.35
CKAP4-201ENST00000378026 C17orf58Q2M2W7 97 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 MOGAT3Q86VF5 341 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 RBMXL3Q8N7X1 1067 aaKnown RBP12.85□□□□□ -0.35
CKAP4-201ENST00000378026 RPP21Q9H633 154 aaKnown RBP12.85□□□□□ -0.35
CKAP4-201ENST00000378026 HILPDAQ9Y5L2 63 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 TANC2Q9HCD6 1990 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 TRGV5A0A0B4J1U4 118 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 CECR9P0C854 216 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 SAA1P0DJI8 122 aaPredicted RBP12.85□□□□□ -0.35
CKAP4-201ENST00000378026 FAM71F2Q6NXP2 309 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 LINC00305Q7Z4B0 112 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 BPIFA4PQ86YQ2 179 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 GCSAMQ8N6F7 178 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 AP1S3Q96PC3 154 aa12.85□□□□□ -0.35
CKAP4-201ENST00000378026 MRPL32Q9BYC8 188 aaKnown RBP12.85□□□□□ -0.35
CKAP4-201ENST00000378026 HTR1DP28221 377 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 C10orf55Q5SWW7 151 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 RAB37Q96AX2 223 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 DAZAP1Q96EP5 407 aaKnown RBP12.84□□□□□ -0.35
CKAP4-201ENST00000378026 ASCL2Q99929 193 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 ZNF318Q5VUA4 2279 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 SMG1Q96Q15 3661 aaKnown RBP12.84□□□□□ -0.35
CKAP4-201ENST00000378026 PSMB11A5LHX3 300 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 HLA-DRB1P01911 266 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 IGLC1P0CG04 106 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 REG1BP48304 166 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 ATP5L2Q7Z4Y8 100 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 PDPNQ86YL7 162 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 CHCHD1Q96BP2 118 aaKnown RBP12.84□□□□□ -0.35
CKAP4-201ENST00000378026 FXYD5Q96DB9 178 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 EPDR1Q9UM22 224 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 CFAP47Q6ZTR5 3102 aa12.84□□□□□ -0.35
CKAP4-201ENST00000378026 NCOR1O75376 2440 aa12.83□□□□□ -0.35
CKAP4-201ENST00000378026 FNDC10F2Z333 226 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 LIPFP07098 398 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 LPAL2Q16609 132 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 C2orf83Q53S99 150 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 INO80CQ6PI98 192 aaPredicted RBP12.83□□□□□ -0.36
CKAP4-201ENST00000378026 OR1B1Q8NGR6 318 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 C7orf69Q9H7B7 122 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 IGHV3-21A0A0B4J1V1 117 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 A8MWL6 223 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 H3BUT2 72 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 FAM162BQ5T6X4 162 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 Q71RC1 249 aaPredicted RBP12.83□□□□□ -0.36
CKAP4-201ENST00000378026 FER1L6-AS1Q8NA97 138 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 ZNF257Q9Y2Q1 563 aa12.83□□□□□ -0.36
CKAP4-201ENST00000378026 TRAV8-1A0A0A6YYK1 113 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 SPRY3O43610 288 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 NCR2O95944 276 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 CT45A6P0DMU7 189 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 CT45A5P0DMU8 189 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 CT45A7P0DMV0 189 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 PMS2CLQ68D20 193 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 MRPL36Q9P0J6 103 aaKnown RBP12.82□□□□□ -0.36
CKAP4-201ENST00000378026 SIT1Q9Y3P8 196 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 RP1L1Q8IWN7 2480 aaPredicted RBP12.82□□□□□ -0.36
CKAP4-201ENST00000378026 ZDBF2Q9HCK1 2354 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 SRRM5B3KS81 715 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 KLRC4-KLRK1H3BQV0 150 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 OR5AL1P0C617 328 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 APELAP0DMC3 54 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 RPS20P60866 119 aaKnown RBP12.82□□□□□ -0.36
CKAP4-201ENST00000378026 GPR82Q96P67 336 aa12.82□□□□□ -0.36
CKAP4-201ENST00000378026 VWA1Q6PCB0 445 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms