RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 RPS10P46783 165 aaKnown RBP13.1□□□□□ -0.31
SDCBP-201ENST00000260130 CEBPGP53567 150 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 UNQ5815/PRO19632Q6UWF5 114 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 SSX9Q7RTT3 188 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 MMD2Q8IY49 270 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 OR4F17Q8NGA8 305 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 OR10G4Q8NGN3 311 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 RNASE11Q8TAA1 199 aaKnown RBP13.1□□□□□ -0.31
SDCBP-201ENST00000260130 OR4F4Q96R69 305 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 ZNF430Q9H8G1 570 aaPredicted RBP13.1□□□□□ -0.31
SDCBP-201ENST00000260130 CMYA5Q8N3K9 4069 aa13.1□□□□□ -0.31
SDCBP-201ENST00000260130 KBTBD11O94819 623 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 RPLP1P05386 114 aaKnown RBP13.09□□□□□ -0.31
SDCBP-201ENST00000260130 DLK1P80370 383 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 TNXAQ16473 311 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 LCNL1Q6ZST4 164 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 CYB561D1Q8N8Q1 229 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 TMEM167AQ8TBQ9 72 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 GPR146Q96CH1 333 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 OR51M1Q9H341 326 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 GSN-AS1Q9NRJ2 163 aa13.09□□□□□ -0.31
SDCBP-201ENST00000260130 A0A1W2PN81 502 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 PLXNB1O43157 2135 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 CLN5O75503 358 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 ACTL6BO94805 426 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 S1PR2O95136 353 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 S100PP25815 95 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 CHRNA7P36544 502 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 KIAA0141Q14154 515 aaPredicted RBP13.08□□□□□ -0.31
SDCBP-201ENST00000260130 SCGB1C1Q8TD33 95 aa13.08□□□□□ -0.31
SDCBP-201ENST00000260130 LSM10Q969L4 123 aaKnown RBP13.08□□□□□ -0.31
SDCBP-201ENST00000260130 FOXA2Q9Y261 457 aaPredicted RBP13.08□□□□□ -0.31
SDCBP-201ENST00000260130 B4DEV8 164 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 POU2AF1Q16633 256 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 ZNF585BQ52M93 769 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 KLK15Q9H2R5 256 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 BET1LQ9NYM9 111 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 MGAM2Q2M2H8 2515 aa13.08□□□□□ -0.32
SDCBP-201ENST00000260130 A0A0G2JRQ6 117 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 LOC102723971A0A1B0GUV8 181 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 SOX15O60248 233 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 PF4V1P10720 104 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 OR4A47Q6IF82 309 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 TMEM68Q96MH6 324 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 RAB9AP51151 201 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 ELOBQ15370 118 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 OR4A5Q8NH83 315 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 SRSF12Q8WXF0 261 aaKnown RBP13.07□□□□□ -0.32
SDCBP-201ENST00000260130 WNK1Q9H4A3 2382 aa13.07□□□□□ -0.32
SDCBP-201ENST00000260130 FBN3Q75N90 2809 aa13.06□□□□□ -0.32
SDCBP-201ENST00000260130 ZNF727A8MUV8 499 aa13.06□□□□□ -0.32
SDCBP-201ENST00000260130 HOXA5P20719 270 aa13.06□□□□□ -0.32
SDCBP-201ENST00000260130 CDX1P47902 265 aaPredicted RBP13.06□□□□□ -0.32
SDCBP-201ENST00000260130 C18orf65Q6ZTR6 163 aa13.06□□□□□ -0.32
SDCBP-201ENST00000260130 PSMG3Q9BT73 122 aaPredicted RBP13.06□□□□□ -0.32
SDCBP-201ENST00000260130 LINC00587B1AMM8 73 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 H3BP45 60 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 SYNGR2O43760 224 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 IL6RP08887 468 aaPredicted RBP13.05□□□□□ -0.32
SDCBP-201ENST00000260130 ERVK-16P61578 105 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 RPL8P62917 257 aaKnown RBP13.05□□□□□ -0.32
SDCBP-201ENST00000260130 HBG1P69891 147 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 HBG2P69892 147 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 ZNF674Q2M3X9 581 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 KLHL30-AS1Q8NEE0 82 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 MYOZ3Q8TDC0 251 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 Q8WTZ3 238 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 NBEAL1Q6ZS30 2694 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 MARCH11A6NNE9 402 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 KRASP01116 189 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 PNRC1Q12796 327 aaPredicted RBP13.05□□□□□ -0.32
SDCBP-201ENST00000260130 ASPHD1Q5U4P2 390 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 OR5T1Q8NG75 326 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 TMEM140Q9NV12 185 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 PSENENQ9NZ42 101 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 CACNG5Q9UF02 275 aa13.05□□□□□ -0.32
SDCBP-201ENST00000260130 C10orf55Q5SWW7 151 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 C8orf86Q6ZUL3 223 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 ZNF491Q8N8L2 437 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 UBE2E2Q96LR5 201 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 GNG13Q9P2W3 67 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 UPK2O00526 184 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 APELAP0DMC3 54 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 G6PCP35575 357 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 SERF2P84101 59 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 MBD3L1Q8WWY6 194 aa13.04□□□□□ -0.32
SDCBP-201ENST00000260130 TRAV3A0A0B4J244 114 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 PF4P02776 101 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 BCL2P10415 239 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 RPL27AP46776 148 aaKnown RBP13.03□□□□□ -0.32
SDCBP-201ENST00000260130 MS4A10Q96PG2 267 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 PARD6GQ9BYG4 376 aaPredicted RBP13.03□□□□□ -0.32
SDCBP-201ENST00000260130 RPRMQ9NS64 109 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 ZNF355PQ9NSJ1 428 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 TMEM242Q9NWH2 141 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 E7EUB6 86 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 IGKV1-39P01597 117 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 IGKV1D-39P04432 117 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 CXCL1P09341 107 aa13.03□□□□□ -0.32
SDCBP-201ENST00000260130 RAB11AP62491 216 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms