RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 FCAMRQ8WWV6 532 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 BORCS5Q969J3 196 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM230Q96A57 120 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 TSC22D3Q99576 134 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 TRAV1-2A0A0B4J238 106 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 SMIM30A4D0T7 59 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF705FA8MVS1 300 aaPredicted RBP5.17□□□□□ -1.58
VPS4A-203ENST00000564399 H3BMM0 161 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 SCGNO76038 276 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 IGKV3-20P01619 116 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF705DP0CH99 300 aaPredicted RBP5.17□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF705BP0CI00 300 aaPredicted RBP5.17□□□□□ -1.58
VPS4A-203ENST00000564399 CRYBB3P26998 211 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 SNCAP37840 140 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 KRTAP10-2P60368 255 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 MLLT11Q13015 90 aaPredicted RBP5.17□□□□□ -1.58
VPS4A-203ENST00000564399 OXA1LQ15070 435 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 KCTD21Q4G0X4 260 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 OR4A16Q8NH70 328 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 ZNRF2Q8NHG8 242 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 MGLLQ99685 303 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 C8orf4Q9NR00 106 aa5.17□□□□□ -1.58
VPS4A-203ENST00000564399 RPS10-NUDT3A0A1W2PQS6 291 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 FAM90A26D6RGX4 464 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 SCGB2A1O75556 95 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 PGLYRP1O75594 196 aaPredicted RBP5.16□□□□□ -1.58
VPS4A-203ENST00000564399 NUDT3O95989 172 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 HBE1P02100 147 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 GNRHRP30968 328 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 AP2S1P53680 142 aaPredicted RBP5.16□□□□□ -1.58
VPS4A-203ENST00000564399 CCL18P55774 89 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 OGFRL1Q5TC84 451 aaPredicted RBP5.16□□□□□ -1.58
VPS4A-203ENST00000564399 H2BFWTQ7Z2G1 175 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 HOGA1Q86XE5 327 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 CADM3Q8N126 398 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF114Q8NC26 417 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 C7orf50Q9BRJ6 194 aaKnown RBP5.16□□□□□ -1.58
VPS4A-203ENST00000564399 TPRKBQ9Y3C4 175 aa5.16□□□□□ -1.58
VPS4A-203ENST00000564399 YTHDF2Q9Y5A9 579 aaKnown RBP5.16□□□□□ -1.58
VPS4A-203ENST00000564399 TRAV18A0A075B6X5 111 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 LOC102723971A0A1B0GUV8 181 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 RGS10O43665 173 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 CLN5O75503 358 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 HLA-DRB4P13762 266 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 HSPE1P61604 102 aaKnown RBP5.15□□□□□ -1.59
VPS4A-203ENST00000564399 DLK1P80370 383 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 PRCDQ00LT1 54 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 RRN3P1Q2M238 152 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 SPINK9Q5DT21 86 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 Q5VSD8 79 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 CMTM1Q8IZ96 169 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 OR5AP2Q8NGF4 316 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 LGALS14Q8TCE9 139 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 FRZBQ92765 325 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 C18orf15Q96N68 181 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 NRN1Q9NPD7 142 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 EHFQ9NZC4 300 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 DAPK2Q9UIK4 370 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 GOLT1BQ9Y3E0 138 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 HLA-DRB4X5D2U9 266 aa5.15□□□□□ -1.59
VPS4A-203ENST00000564399 NOTOA8MTQ0 251 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 F5H768 121 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 HNRNPCP07910 306 aaKnown RBP eCLIP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 OPRK1P41145 380 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 HOXA1P49639 335 aaPredicted RBP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 SUB1P53999 127 aaKnown RBP eCLIP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 DEFB1P60022 68 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 CLINT1Q14677 625 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 MLANAQ16655 118 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 TIGITQ495A1 244 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 C4orf48Q5BLP8 95 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 C22orf42Q6IC83 251 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 C16orf54Q6UWD8 224 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 LYPD1Q8N2G4 141 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 SLC35G3Q8N808 338 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 OR4B1Q8NGF8 309 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 GLMPQ8WWB7 406 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 LINC00052Q96N35 136 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 ZNF2Q9BSG1 426 aaPredicted RBP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 TMEM208Q9BTX3 173 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 MAGT1Q9H0U3 335 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 SEPSECSQ9HD40 501 aaKnown RBP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 RHBDL2Q9NX52 303 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 PGPEP1Q9NXJ5 209 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 PTTG2Q9NZH5 202 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 MRPL36Q9P0J6 103 aaKnown RBP5.14□□□□□ -1.59
VPS4A-203ENST00000564399 LINC00588Q9Y4M8 146 aa5.14□□□□□ -1.59
VPS4A-203ENST00000564399 TRAV30A0A087WSZ9 112 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 TRDV1A0A1B0GX56 115 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 MEIS3P1A6NDR6 274 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 CORTO00230 105 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 GPR31O00270 319 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 DEFB130BP0DP73 79 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 DEFB130AP0DP74 79 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 S100GP29377 79 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 NKX2-1P43699 371 aaPredicted RBP5.13□□□□□ -1.59
VPS4A-203ENST00000564399 CBX5P45973 191 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 RFX2P48378 723 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 PHLDA2Q53GA4 152 aa5.13□□□□□ -1.59
VPS4A-203ENST00000564399 TTC32Q5I0X7 151 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms