RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 A0A1W2PPI3 338 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 RPS10-NUDT3A0A1W2PQS6 291 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 SRRM4A7MD48 611 aaKnown RBP5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 FNDC10F2Z333 226 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 INS-IGF2F8WCM5 200 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 RNASEK-C17orf49H0YIS7 233 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 CORTO00230 105 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 RRHO14718 337 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 NPFFO15130 113 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 NBR2O15453 112 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 CNIH1O95406 144 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM50AO95807 157 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 MED14OSP0DP75 135 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 SPP1P10451 314 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 HOXA5P20719 270 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 VDAC2P45880 294 aaPredicted RBP5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 IER3P46695 156 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 CAMLGP49069 296 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 DLK1P80370 383 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 SERF2P84101 59 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 DIAPH2-AS1Q14236 149 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 PSG5Q15238 335 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 MMDQ15546 238 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 SSX2Q16385 188 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 LRRC75BQ2VPJ9 315 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 ETFRF1Q6IPR1 90 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 COMMD7Q86VX2 200 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 PPP1R27Q86WC6 154 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 HSD17B11Q8NBQ5 300 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 OR1L6Q8NGR2 347 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 OR2G3Q8NGZ4 309 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 TBX15Q96SF7 602 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 PSMG3Q9BT73 122 aaPredicted RBP5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 C16orf95Q9H693 158 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 VPREB3Q9UKI3 123 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 FAM96BQ9Y3D0 163 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 TIMM9Q9Y5J7 89 aa5.63□□□□□ -1.51
DEPDC4-208ENST00000549341 TRAV3A0A0B4J244 114 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IGHV1-69DA0A0B4J2H0 117 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 CENPVL3A0A0U1RRI6 287 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 UBE2L5PA0A1B0GUS4 154 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 A0A1W2PRD5 423 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 A0A1W2PRF3 423 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 A0A1W2PRM7 423 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 SMCO3A2RU48 225 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IGKV1D-33P01593 117 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IGKV1-33P01594 117 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IGHV1-69P01742 117 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 HBE1P02100 147 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 NMBP08949 121 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IGLL1P15814 213 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM11P17152 192 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 FGF7P21781 194 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 ATP6V0CP27449 155 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 HABP2Q14520 560 aaPredicted RBP5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 TNXAQ16473 311 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 PRSS8Q16651 343 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 C2orf83Q53S99 150 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 SPINK9Q5DT21 86 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 HCP5Q6MZN7 132 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 IL34Q6ZMJ4 242 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 COMMD1Q8N668 190 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 LFNGQ8NES3 379 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 NPBQ8NG41 125 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 RNASEH2CQ8TDP1 164 aaKnown RBP5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 CACNG8Q8WXS5 425 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 SLC35E1Q96K37 410 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 OR4C12Q96R67 309 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 WDR61Q9GZS3 305 aaKnown RBP5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 ZNF430Q9H8G1 570 aaPredicted RBP5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 WFDC1Q9HC57 220 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 NPVFQ9HCQ7 196 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 PARP11Q9NR21 331 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 NDUFA4L2Q9NRX3 87 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 PCLOQ9Y6V0 5065 aa5.62□□□□□ -1.51
DEPDC4-208ENST00000549341 WI2-2373I1.2A0A1W2PRP0 233 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 RAB19A4D1S5 217 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 NCBP2LA6PVI3 153 aaKnown RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 C15orf62A8K5M9 175 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 FGF16O43320 207 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 SCGB2A1O75556 95 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 NDUFA3O95167 84 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 IGLV2-23P01705 113 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 FBP1P09467 338 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 SAA4P35542 130 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 GPX4P36969 197 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 DLX1P56177 255 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 GNB1P62873 340 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 PRB3Q04118 309 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 AKR1C1Q04828 323 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 ZNF616Q08AN1 781 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 ACOT6Q3I5F7 207 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 FAM74A1Q5RGS3 127 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 UQCC3Q6UW78 93 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 TMEM182Q6ZP80 229 aaPredicted RBP5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 LHFPL4Q7Z7J7 247 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 SLC7A5P1Q8MH63 180 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 ABHD5Q8WTS1 349 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 CFHR4Q92496 578 aa5.61□□□□□ -1.51
DEPDC4-208ENST00000549341 MARC2Q969Z3 335 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms