RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OSTCQ9NRP0 149 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 SORL1Q92673 2214 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 SMARCA4P51532 1647 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 PIK3C2GO75747 1445 aa1.4□□□□□ -2.19
VPS29-205ENST00000548539 KIAA2026Q5HYC2 2103 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 C1orf196B1AJZ1 125 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 OR5F1O95221 314 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 C8GP07360 202 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 MRPS15P82914 257 aaKnown RBP1.39□□□□□ -2.19
VPS29-205ENST00000548539 SURF2Q15527 256 aaPredicted RBP1.39□□□□□ -2.19
VPS29-205ENST00000548539 OOSP2Q86WS3 158 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 C12orf45Q8N5I9 185 aaPredicted RBP1.39□□□□□ -2.19
VPS29-205ENST00000548539 OR52L1Q8NGH7 329 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 SLC50A1Q9BRV3 221 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 ARL2BPQ9Y2Y0 163 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 FAM32AQ9Y421 112 aaKnown RBP1.39□□□□□ -2.19
VPS29-205ENST00000548539 TOPBP1Q92547 1522 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 CCDC88AQ3V6T2 1871 aa1.39□□□□□ -2.19
VPS29-205ENST00000548539 TRAV14DV4A0A0A6YYC5 116 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 A0A0D9SG52 128 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 CLDN25C9JDP6 229 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 OR7C1O76099 320 aaPredicted RBP1.38□□□□□ -2.19
VPS29-205ENST00000548539 SERPINA1P01009 418 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 PPIBP23284 216 aaKnown RBP1.38□□□□□ -2.19
VPS29-205ENST00000548539 HSD11B1P28845 292 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 CASP1P29466 404 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 SERPINB9P50453 376 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 MRPS25P82663 173 aaKnown RBP1.38□□□□□ -2.19
VPS29-205ENST00000548539 LIN52Q52LA3 116 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 LINC01554Q52M75 96 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 TRAPPC6BQ86SZ2 158 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 Q8N2B8 174 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 BTF3L4Q96K17 158 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 SERPINI1Q99574 410 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 ENY2Q9NPA8 101 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 KIF13BQ9NQT8 1826 aa1.38□□□□□ -2.19
VPS29-205ENST00000548539 DOCK5Q9H7D0 1870 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 CR1P17927 2039 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 TRAV1-1A0A0B4J248 108 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 RHEBQ15382 184 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 AKIRIN2Q53H80 203 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 ZNF826PQ6ZT77 177 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 DEFB128Q7Z7B8 93 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 REG4Q9BYZ8 158 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 NMNAT1Q9HAN9 279 aaPredicted RBP1.37□□□□□ -2.19
VPS29-205ENST00000548539 CUL9Q8IWT3 2517 aa1.37□□□□□ -2.19
VPS29-205ENST00000548539 IGKV3D-7A0A0C4DH55 119 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 IGKV3OR2-268A0A0C4DH90 116 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 MRPS14O60783 128 aaKnown RBP1.36□□□□□ -2.19
VPS29-205ENST00000548539 TCL1BO95988 128 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 ASAH2BP0C7U1 165 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 LYNX1P0DP58 116 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 SRIP30626 198 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 RHOBP62745 196 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 NCOA1Q15788 1441 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 Q6Q795 121 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 LCA10Q71F78 164 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 OR4D11Q8NGI4 311 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 WFDC5Q8TCV5 224 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 AQP3Q92482 292 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 PHB2Q99623 299 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 C9orf16Q9BUW7 83 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 TVP23BQ9NYZ1 205 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 NEO1Q92859 1461 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 NUMA1Q14980 2115 aa1.36□□□□□ -2.19
VPS29-205ENST00000548539 RTL1A6NKG5 1358 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 FN1P02751 2386 aaKnown RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 TRAV3A0A0B4J244 114 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 FUOMA2VDF0 154 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 MGST1P10620 155 aaKnown RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 COX6A1P12074 109 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 ERP29P30040 261 aaKnown RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 CAPZBP47756 277 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 YPEL3P61236 119 aaPredicted RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 TAF1AQ15573 450 aaPredicted RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 KRTAP21-3Q3LHN1 58 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 RNASE10Q5GAN6 216 aaKnown RBP1.35□□□□□ -2.19
VPS29-205ENST00000548539 C10orf55Q5SWW7 151 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 OR8D4Q8NGM9 314 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 C10orf105Q8TEF2 133 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 GPR146Q96CH1 333 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 C2orf50Q96LR7 162 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 OR5AC2Q9NZP5 309 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 OPTCQ9UBM4 332 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 CCDC88CQ9P219 2028 aa1.35□□□□□ -2.19
VPS29-205ENST00000548539 RIC1Q4ADV7 1423 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 A0A087X0T9 212 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 FAM159BA6NKW6 160 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 CYB5BO43169 146 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 CST2P09228 141 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 OR4E1P0C645 316 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 BASP1P80723 227 aaKnown RBP1.34□□□□□ -2.19
VPS29-205ENST00000548539 TEX36Q5VZQ5 186 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 UNQ6190/PRO20217Q6UXQ8 127 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 LINC00311Q8N616 119 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 OR13D1Q8NGV5 346 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 OR10X1Q8NGY0 326 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 GNPDA2Q8TDQ7 276 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 CYSTM1Q9H1C7 97 aa1.34□□□□□ -2.19
VPS29-205ENST00000548539 IGKV2-40A0A087WW87 121 aaPredicted RBP1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms