RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MISP3Q96FF7 219 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 MED13LQ71F56 2210 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 M0R036 132 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 CORTO00230 105 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 NPFFO15130 113 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 PAGE4O60829 102 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 CXorf1O96002 111 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 FXYD3Q14802 87 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 RUSC1-AS1Q66K80 236 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 IQCF2Q8IXL9 164 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 SLC25A33Q9BSK2 321 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 C20orf24Q9BUV8 137 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 TSPAN4O14817 238 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 ARL14EPLP0DKL9 152 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 RND2P52198 227 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 DSCR9P59020 149 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 SPNS3Q6ZMD2 512 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 CSMD2Q7Z408 3487 aa16.44■□□□□ 0.22
VPS28-209ENST00000528142 TMEM11P17152 192 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 AKIRIN2Q53H80 203 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 FAM120AOSQ5T036 256 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 ZNF562Q6V9R5 426 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 C19orf24Q9BVV8 132 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 RPS10P5Q9NQ39 176 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 PTPN13Q12923 2485 aa16.43■□□□□ 0.22
VPS28-209ENST00000528142 TCRBV4S1A1TA0A5B7 111 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 PSMB11A5LHX3 300 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 FAM106CPP0CH98 169 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 CTRB1P17538 263 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 AKR1C3P42330 323 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 RHEBQ15382 184 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 FAM78BQ5VT40 261 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 CTRB2Q6GPI1 263 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 TMEM116Q8NCL8 245 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 FUT9Q9Y231 359 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 TMEM250H0YL14 139 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 OR5G3P0C626 314 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 CX3CL1P78423 397 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 MIR17HGQ75NE6 70 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 NIPSNAP3BQ9BS92 247 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 WNT10AQ9GZT5 417 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 NAV3Q8IVL0 2385 aa16.42■□□□□ 0.22
VPS28-209ENST00000528142 NCBP2LA6PVI3 153 aaKnown RBP16.41■□□□□ 0.22
VPS28-209ENST00000528142 MT-CO2P00403 227 aa16.41■□□□□ 0.22
VPS28-209ENST00000528142 BRS3P32247 399 aa16.41■□□□□ 0.22
VPS28-209ENST00000528142 ZNF90Q03938 601 aa16.41■□□□□ 0.22
VPS28-209ENST00000528142 TMEM37Q8WXS4 190 aa16.41■□□□□ 0.22
VPS28-209ENST00000528142 POLQO75417 2590 aa16.41■□□□□ 0.22
VPS28-209ENST00000528142 GCHFRP30047 84 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 Q8N9W7 124 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 OR4F5Q8NH21 305 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 NANPQ8TBE9 248 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 TVP23CQ96ET8 276 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 OR4F4Q96R69 305 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 FAM103A1Q9BTL3 118 aaKnown RBP16.4■□□□□ 0.22
VPS28-209ENST00000528142 SMCO4Q9NRQ5 59 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 I3L2K1 104 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 SELENOTP62341 195 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 TRGV9Q99603 122 aa16.4■□□□□ 0.22
VPS28-209ENST00000528142 NBPF19A0A087WUL8 3843 aa16.39■□□□□ 0.22
VPS28-209ENST00000528142 IGHV1-69DA0A0B4J2H0 117 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 C11orf94C9JXX5 98 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 IGHV1-69P01742 117 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 NDPQ00604 133 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 ASPHD1Q5U4P2 390 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 VPS13CQ709C8 3753 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 TNFRSF19Q9NS68 423 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 ABCA12Q86UK0 2595 aa16.39■□□□□ 0.21
VPS28-209ENST00000528142 IGHV3-21A0A0B4J1V1 117 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 MSMBP08118 114 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 UBE2G2P60604 165 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 CLEC12BQ2HXU8 276 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 ARPC1AQ92747 370 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 DNAJC4Q9NNZ3 241 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 TECRQ9NZ01 308 aaKnown RBP16.38■□□□□ 0.21
VPS28-209ENST00000528142 C1RLQ9NZP8 487 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 WNK2Q9Y3S1 2297 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 TSPAN9O75954 239 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 OR1L6Q8NGR2 347 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 C22orf15Q8WYQ4 148 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 ZNF503Q96F45 646 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 TUBA4BQ9H853 241 aa16.38■□□□□ 0.21
VPS28-209ENST00000528142 APCP25054 2843 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 SLC25A16P16260 332 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 NPPCP23582 126 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 ATP5G3P48201 142 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 PATE2Q6UY27 113 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 TXNDC17Q9BRA2 123 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 MRPL32Q9BYC8 188 aaKnown RBP16.37■□□□□ 0.21
VPS28-209ENST00000528142 SDF2L1Q9HCN8 221 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 ABCA2Q9BZC7 2435 aa16.37■□□□□ 0.21
VPS28-209ENST00000528142 IGHV7-81A0A0B4J1V7 117 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 NPIPB5A8MRT5 1133 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 ZNF727A8MUV8 499 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 K7EIM0 57 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 CLN5O75503 358 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 EGR2P11161 476 aaPredicted RBP16.36■□□□□ 0.21
VPS28-209ENST00000528142 CST9LP1Q5W188 147 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 RNF2Q99496 336 aa16.36■□□□□ 0.21
VPS28-209ENST00000528142 IGHV3OR16-10A0A075B7F0 116 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms