RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HLA-DRB4P13762 266 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 EIF2B2P49770 351 aaKnown RBP7.71□□□□□ -1.18
DDX41-216ENST00000513562 PPP5CP53041 499 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 DHRS2Q13268 280 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 OGFRL1Q5TC84 451 aaPredicted RBP7.71□□□□□ -1.18
DDX41-216ENST00000513562 NARS2Q96I59 477 aaKnown RBP7.71□□□□□ -1.18
DDX41-216ENST00000513562 ATG101Q9BSB4 218 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 DUSP21Q9H596 190 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 U3KQE9 123 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 HLA-DRB4X5D2U9 266 aa7.71□□□□□ -1.18
DDX41-216ENST00000513562 SMIM30A4D0T7 59 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 FAM90A26D6RGX4 464 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 RGS10O43665 173 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 HERV-K104P61576 105 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 SNRPD3P62318 126 aaKnown RBP7.7□□□□□ -1.18
DDX41-216ENST00000513562 ERHP84090 104 aaKnown RBP7.7□□□□□ -1.18
DDX41-216ENST00000513562 TSPAN14Q8NG11 270 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 GLMPQ8WWB7 406 aa7.7□□□□□ -1.18
DDX41-216ENST00000513562 SEPSECSQ9HD40 501 aaKnown RBP7.7□□□□□ -1.18
DDX41-216ENST00000513562 IGHV3OR16-12A0A075B7B8 117 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 TRDV1A0A1B0GX56 115 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 NOTOA8MTQ0 251 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 AP2S1P53680 142 aaPredicted RBP7.69□□□□□ -1.18
DDX41-216ENST00000513562 HSPE1P61604 102 aaKnown RBP7.69□□□□□ -1.18
DDX41-216ENST00000513562 C16orf54Q6UWD8 224 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 OR5AP2Q8NGF4 316 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 OR4A16Q8NH70 328 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 LGALS14Q8TCE9 139 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 NDUFB11Q9NX14 153 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 RHBDL2Q9NX52 303 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 MRPL36Q9P0J6 103 aaKnown RBP7.69□□□□□ -1.18
DDX41-216ENST00000513562 TPRKBQ9Y3C4 175 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 YTHDF2Q9Y5A9 579 aaKnown RBP7.69□□□□□ -1.18
DDX41-216ENST00000513562 NACAE9PAV3 2078 aa7.69□□□□□ -1.18
DDX41-216ENST00000513562 ANKRD65E5RJM6 399 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 CLN5O75503 358 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 FCER2P06734 321 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 ALDH3B2P48448 385 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 DAD1P61803 113 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 C22orf42Q6IC83 251 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 PRSS48Q7RTY5 328 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 CMTM1Q8IZ96 169 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 ZNF709Q8N972 641 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 SEC22AQ96IW7 307 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 NRN1Q9NPD7 142 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 DAPK2Q9UIK4 370 aa7.68□□□□□ -1.18
DDX41-216ENST00000513562 TRAV18A0A075B6X5 111 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 LOC102723971A0A1B0GUV8 181 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 INS-IGF2F8WCM5 200 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 CORTO00230 105 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 SCGB2A1O75556 95 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 IGKV1-39P01597 117 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 IGKV1-17P01599 117 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 IGKV1D-39P04432 117 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 BTF3P20290 206 aaKnown RBP7.67□□□□□ -1.18
DDX41-216ENST00000513562 NKX2-1P43699 371 aaPredicted RBP7.67□□□□□ -1.18
DDX41-216ENST00000513562 HOXA1P49639 335 aaPredicted RBP7.67□□□□□ -1.18
DDX41-216ENST00000513562 FXYD7P58549 80 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 GDF5OSQ5U4N7 250 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 DHRS11Q6UWP2 260 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 GSG1LQ6UXU4 331 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 OR4X1Q8NH49 305 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 TMEM230Q96A57 120 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 SLC25A38Q96DW6 304 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 FXYD6Q9H0Q3 95 aa7.67□□□□□ -1.18
DDX41-216ENST00000513562 FNDC4Q9H6D8 234 aaPredicted RBP7.67□□□□□ -1.18
DDX41-216ENST00000513562 FAM212BQ9NTI7 297 aaPredicted RBP7.67□□□□□ -1.18
DDX41-216ENST00000513562 GPR31O00270 319 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 HBE1P02100 147 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 HNRNPCP07910 306 aaKnown RBP eCLIP7.66□□□□□ -1.18
DDX41-216ENST00000513562 SNCAP37840 140 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 CBX5P45973 191 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 TBCEQ15813 527 aaPredicted RBP7.66□□□□□ -1.18
DDX41-216ENST00000513562 TIGITQ495A1 244 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 SPINK9Q5DT21 86 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 Q5VSD8 79 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 SFXN4Q6P4A7 337 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 H2BFWTQ7Z2G1 175 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 C1orf158Q8N1D5 194 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 LYPD1Q8N2G4 141 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 CLUHP3Q96NS8 147 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 ZNF2Q9BSG1 426 aaPredicted RBP7.66□□□□□ -1.18
DDX41-216ENST00000513562 KRTAP1-5Q9BYS1 174 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 AUNIPQ9H7T9 357 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 EHFQ9NZC4 300 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 GOLT1BQ9Y3E0 138 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 LINC00588Q9Y4M8 146 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 VPS13BQ7Z7G8 4022 aa7.66□□□□□ -1.18
DDX41-216ENST00000513562 A0A0A6YYH2 397 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 A6NJ64 397 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 IGKV3-20P01619 116 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 RNASE2P10153 161 aaKnown RBP7.65□□□□□ -1.18
DDX41-216ENST00000513562 OPRK1P41145 380 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 RFX2P48378 723 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 CCL18P55774 89 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 DEFB1P60022 68 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 RRN3P1Q2M238 152 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 MRGPRFQ96AM1 343 aa7.65□□□□□ -1.18
DDX41-216ENST00000513562 SAV1Q9H4B6 383 aaPredicted RBP7.65□□□□□ -1.18
DDX41-216ENST00000513562 TRAV30A0A087WSZ9 112 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms