RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 RCN1Q15293 331 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 FCN2Q15485 313 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 CCDC58Q4VC31 144 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 YIF1BQ5BJH7 314 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 TTC23Q5W5X9 447 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 ZNF773Q6PK81 442 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 SPATA24Q86W54 205 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 CDH26Q8IXH8 852 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 ARHGAP24Q8N264 748 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 ZNF114Q8NC26 417 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 TCTEX1D2Q8WW35 142 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 MAFIPQ8WZ33 124 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 FCGR1BQ92637 280 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 SLC25A46Q96AG3 418 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 SMIM19Q96E16 107 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 Q96MT0 163 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 UQCC2Q9BRT2 126 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 TMEM231Q9H6L2 316 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 AMBNQ9NP70 447 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 FAM212BQ9NTI7 297 aaPredicted RBP3.61□□□□□ -1.83
PTPN4-210ENST00000485247 SPATA2Q9UM82 520 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 GOLT1BQ9Y3E0 138 aa3.61□□□□□ -1.83
PTPN4-210ENST00000485247 F11RQ9Y624 299 aaKnown RBP3.61□□□□□ -1.83
PTPN4-210ENST00000485247 A0A0J9YY99 117 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 A0A1W2PS18 150 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 SNTNA6NMZ2 147 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 UPK2O00526 184 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 GNG7O60262 68 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 ATP5G1P05496 136 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 UBBP0CG47 229 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 LIMS3P0CW19 117 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 LIMS4P0CW20 117 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TRAPPC2P0DI81 140 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TRAPPC2BP0DI82 140 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 CD37P11049 281 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 CD36P16671 472 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 NPPCP23582 126 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 P2RY1P47900 373 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 ATP5G3P48201 142 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 MFAP4P55083 255 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 DEFB1P60022 68 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 KRTAP10-4P60372 401 aaPredicted RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 RPS11P62280 158 aaKnown RBP eCLIP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 BAK1Q16611 211 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TIMM50Q3ZCQ8 353 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 HSP90B2PQ58FF3 399 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 GDF5OSQ5U4N7 250 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 MEDAGQ5VYS4 303 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 AQP12AQ8IXF9 295 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 H1FOOQ8IZA3 346 aaPredicted RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 C1orf158Q8N1D5 194 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 NKAIN3Q8N8D7 197 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 ZFP41Q8N8Y5 198 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TRUB1Q8WWH5 349 aaKnown RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 MOB3AQ96BX8 217 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 ARHGAP5-AS1Q96IT6 56 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 SLC29A1Q99808 456 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 CABLES2Q9BTV7 478 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 HINT2Q9BX68 163 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 GABARAPL3Q9BY60 117 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 RBM38Q9H0Z9 239 aaKnown RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 LPAR5Q9H1C0 372 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 BET1LQ9NYM9 111 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TAS2R8Q9NYW2 309 aa3.6□□□□□ -1.83
PTPN4-210ENST00000485247 RBMX2Q9Y388 322 aaKnown RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 MRPS16Q9Y3D3 137 aaKnown RBP3.6□□□□□ -1.83
PTPN4-210ENST00000485247 TRAV26-1A0A087WT03 109 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 TEX50A0A1B0GTY4 177 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 A0A1B0GU03 582 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 LYRM9A8MSI8 78 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 ZNF705GA8MUZ8 300 aaPredicted RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 TMEM14DPA8MWL7 114 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 OGG1O15527 345 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 ATP8B1O43520 1251 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 LALBAP00709 142 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 FCGR3AP08637 254 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 HLA-DRB4P13762 266 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 DCKP27707 260 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 PPP5CP53041 499 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 TMEM50BP56557 158 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 SNRPD3P62318 126 aaKnown RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 QRFPP83859 136 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 OR5I1Q13606 314 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 RBM48Q5RL73 367 aaKnown RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 HSD17B13Q7Z5P4 300 aaPredicted RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 ZNF709Q8N972 641 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 OR4B1Q8NGF8 309 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 OR52I1Q8NGK6 324 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 PINX1Q96BK5 328 aaKnown RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 GNPNAT1Q96EK6 184 aaPredicted RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 URB1-AS1Q96HZ7 61 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 DERL3Q96Q80 235 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 HSD17B10Q99714 261 aaKnown RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 TXN2Q99757 166 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 URM1Q9BTM9 101 aaKnown RBP3.59□□□□□ -1.83
PTPN4-210ENST00000485247 TMEM208Q9BTX3 173 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 PECRQ9BY49 303 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 SLC35B3Q9H1N7 401 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 HLA-DRB4X5D2U9 266 aa3.59□□□□□ -1.83
PTPN4-210ENST00000485247 IGKV1D-13A0A0B4J2D9 117 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms