RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TGOLN2O43493 480 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 IFNA17P01571 189 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 IGKV1-39P01597 117 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 IGKV1D-39P04432 117 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 FRMD6-AS1P0C7T7 363 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 FOLR2P14207 255 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 UCP1P25874 307 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 TNFSF8P32971 234 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 SNCAP37840 140 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 HOXA1P49639 335 aaPredicted RBP6.15□□□□□ -1.42
VPS53-214ENST00000572607 DHODHQ02127 395 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 GUCA2BQ16661 112 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 SP6Q3SY56 376 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 PYDC2Q56P42 97 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 FAM219AQ8IW50 185 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 UBAC2Q8NBM4 344 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 OR1P1Q8NH06 330 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 ZNF502Q8TBZ5 544 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 MARC2Q969Z3 335 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 BSCL2Q96G97 398 aaPredicted RBP6.15□□□□□ -1.42
VPS53-214ENST00000572607 ATP6V0BQ99437 205 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 THAP7Q9BT49 309 aaPredicted RBP6.15□□□□□ -1.42
VPS53-214ENST00000572607 NXF2Q9GZY0 626 aaKnown RBP6.15□□□□□ -1.42
VPS53-214ENST00000572607 ZMAT4Q9H898 229 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 KCNIP3Q9Y2W7 256 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 DMRT1Q9Y5R6 373 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 U3KQK5 164 aa6.15□□□□□ -1.42
VPS53-214ENST00000572607 STARD9Q9P2P6 4700 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 TENM2Q9NT68 2774 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 HYDINQ4G0P3 5121 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 IGHV3-21A0A0B4J1V1 117 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 PIGBOS1A0A0B4J2F0 54 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 ANKRD20A5PA0PJZ0 165 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 OR2T8A6NH00 312 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 A8MWP6 167 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 ZNF701M0R085 212 aaPredicted RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 NUPL2O15504 423 aaKnown RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 SCGB2A1O75556 95 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 IGKV1-5P01602 117 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 OR5AC1P0C628 307 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 IGHV4-30-4P0DP06 118 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 ANXA3P12429 323 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 CBLN1P23435 193 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 INPP1P49441 399 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 SUB1P53999 127 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS53-214ENST00000572607 ELLP55199 621 aaPredicted RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 RELQ04864 619 aaPredicted RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 CD300EQ496F6 205 aaPredicted RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 ZNF57Q68EA5 555 aaPredicted RBP6.14□□□□□ -1.43
VPS53-214ENST00000572607 SPSB3Q6PJ21 355 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 TOMM5Q8N4H5 51 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 OR2C3Q8N628 320 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 ZNF114Q8NC26 417 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 OR51S1Q8NGJ8 323 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 SCARB1Q8WTV0 552 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 WWC2-AS2Q96NR7 200 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 CITED4Q96RK1 184 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 TMEM222Q9H0R3 208 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 C5orf66Q9H5L9 145 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 TUBA4BQ9H853 241 aa6.14□□□□□ -1.43
VPS53-214ENST00000572607 TNCP24821 2201 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 IGHV3-35A0A0C4DH35 117 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 TMEM213A2RRL7 107 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CRYM-AS1A6NIL9 109 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CORTO00230 105 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 ST8SIA3O43173 380 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 GNG7O60262 68 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CDS2O95674 445 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 MT-CO2P00403 227 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 MFAP4P55083 255 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CD81P60033 236 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 DEFB114Q30KQ6 69 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 ANKRD55Q3KP44 614 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 SPINK9Q5DT21 86 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 SPANXN2Q5MJ10 180 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 TMEM268Q5VZI3 342 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 RBPMS2Q6ZRY4 209 aaKnown RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 SLC16A13Q7RTY0 426 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 SBSPONQ8IVN8 264 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 Q8N1Y9 231 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 UXS1Q8NBZ7 420 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 DUSP18Q8NEJ0 188 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CACNG8Q8WXS5 425 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 TMEM190Q8WZ59 177 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 RBPMSQ93062 196 aaKnown RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 PINX1Q96BK5 328 aaKnown RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 TXN2Q99757 166 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 NEURL2Q9BR09 285 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 RTBDNQ9BSG5 229 aaPredicted RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 C20orf24Q9BUV8 137 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 ZNF436Q9C0F3 470 aaPredicted RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 MRPL27Q9P0M9 148 aaKnown RBP6.13□□□□□ -1.43
VPS53-214ENST00000572607 CACFD1Q9UGQ2 172 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 GPR132Q9UNW8 380 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 CSMD3Q7Z407 3707 aa6.13□□□□□ -1.43
VPS53-214ENST00000572607 A0A0B4J293 547 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 IZUMO1RA6ND01 250 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 A8MZ25 164 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 INS-IGF2F8WCM5 200 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms