RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 DHRS2Q13268 280 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 RAB11BQ15907 218 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 POU2AF1Q16633 256 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 HSD17B12Q53GQ0 312 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 ZNF600Q6ZNG1 722 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 Q6ZS49 121 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 MOB3AQ96BX8 217 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 TMEM80Q96HE8 168 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 DCSTAMPQ9H295 470 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 ZFAND3Q9H8U3 227 aa9.1□□□□□ -0.95
CCDC40-208ENST00000572270 IGKV1D-8A0A087WSZ0 117 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 LOC100130705A0A1B0GUX0 176 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 H3BMM0 161 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 RBFOX2O43251 390 aaKnown RBP eCLIP9.09□□□□□ -0.95
CCDC40-208ENST00000572270 ERVK-16P61578 105 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 OR1P1Q8NH06 330 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 TMEM56Q96MV1 263 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 METTL26Q96S19 204 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 C7orf50Q9BRJ6 194 aaKnown RBP9.09□□□□□ -0.95
CCDC40-208ENST00000572270 NDUFA4L2Q9NRX3 87 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 GOLT1BQ9Y3E0 138 aa9.09□□□□□ -0.95
CCDC40-208ENST00000572270 F5H768 121 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 I3L2K1 104 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 MYL12BO14950 172 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 MT-CO2P00403 227 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 IGHV3-48P01763 117 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 RANBP1P43487 201 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 HOXA1P49639 335 aaPredicted RBP9.08□□□□□ -0.96
CCDC40-208ENST00000572270 FXYD7P58549 80 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 CATR1Q13166 79 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 RRN3P1Q2M238 152 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 MS4A15Q8N5U1 240 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 PINX1Q96BK5 328 aaKnown RBP9.08□□□□□ -0.96
CCDC40-208ENST00000572270 SLC7A6OSQ96CW6 309 aaPredicted RBP9.08□□□□□ -0.96
CCDC40-208ENST00000572270 ZNF446Q9NWS9 450 aa9.08□□□□□ -0.96
CCDC40-208ENST00000572270 SULT1C2O00338 296 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 MFNGO00587 321 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 WBP4O75554 376 aaKnown RBP9.07□□□□□ -0.96
CCDC40-208ENST00000572270 HLA-DRB4P13762 266 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 NPBWR1P48145 328 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 CLDN12P56749 244 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 LINC00315P59091 139 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 HAMPP81172 84 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 RNASE12Q5GAN4 147 aaKnown RBP9.07□□□□□ -0.96
CCDC40-208ENST00000572270 C1orf146Q5VVC0 180 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 OR10R2Q8NGX6 335 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 FAM3DQ96BQ1 224 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 ZNF586Q9NXT0 402 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 RAB22AQ9UL26 194 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 OR51B2Q9Y5P1 312 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 HLA-DRB4X5D2U9 266 aa9.07□□□□□ -0.96
CCDC40-208ENST00000572270 EFCAB10A6NFE3 127 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 IGKV3-20P01619 116 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 HIST1H1DP16402 221 aaKnown RBP9.06□□□□□ -0.96
CCDC40-208ENST00000572270 DTYMKP23919 212 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 WNT4P56705 351 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 C2orf76Q3KRA6 126 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 CCDC197Q8NCU1 140 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 RNF141Q8WVD5 230 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 SECTM1Q8WVN6 248 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 PLEKHA2Q9HB19 425 aa9.06□□□□□ -0.96
CCDC40-208ENST00000572270 TMEM272A0A1B0GTI8 110 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 SNAPC5O75971 98 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 PLA2G1BP04054 148 aaKnown RBP9.05□□□□□ -0.96
CCDC40-208ENST00000572270 CRYBB3P26998 211 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 AP2S1P53680 142 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-208ENST00000572270 TPRA1Q86W33 373 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 DEFB104AQ8WTQ1 72 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 COMMD9Q9P000 198 aa9.05□□□□□ -0.96
CCDC40-208ENST00000572270 AK6Q9Y3D8 172 aaKnown RBP9.05□□□□□ -0.96
CCDC40-208ENST00000572270 A0A1B0GU03 582 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 MARCH11A6NNE9 402 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 LYRM9A8MSI8 78 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 FAM90A26D6RGX4 464 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 ATP5G1P05496 136 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 DEFB130BP0DP73 79 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 DEFB130AP0DP74 79 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 GCSHP23434 173 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 ATP5G3P48201 142 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 MSMO1Q15800 293 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 CNIH2Q6PI25 160 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 ZBTB34Q8NCN2 500 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 UPK3BQ9BT76 320 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 CCL28Q9NRJ3 127 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 NSG2Q9Y328 171 aa9.04□□□□□ -0.96
CCDC40-208ENST00000572270 UCHL1P09936 223 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 ARPC4P59998 168 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 TMEM69Q5SWH9 247 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 Q6ZRN7 208 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-208ENST00000572270 OR51H1Q8NH63 302 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 GFI1Q99684 422 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 TMEM208Q9BTX3 173 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 MAGT1Q9H0U3 335 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 FNDC4Q9H6D8 234 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-208ENST00000572270 SEPSECSQ9HD40 501 aaKnown RBP9.03□□□□□ -0.96
CCDC40-208ENST00000572270 FKBP11Q9NYL4 201 aa9.03□□□□□ -0.96
CCDC40-208ENST00000572270 SCGB2A1O75556 95 aa9.02□□□□□ -0.97
CCDC40-208ENST00000572270 NKX2-1P43699 371 aaPredicted RBP9.02□□□□□ -0.97
CCDC40-208ENST00000572270 PPP5CP53041 499 aa9.02□□□□□ -0.97
CCDC40-208ENST00000572270 ARL6IP1Q15041 203 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms