RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 H1FXQ92522 213 aaKnown RBP1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 CMSS1Q9BQ75 279 aaKnown RBP1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 TMEM147Q9BVK8 224 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 FUOMA2VDF0 154 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 PIRO00625 290 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 HTR1AP08908 422 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 LSM6P62312 80 aaKnown RBP1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 Q8N2B8 174 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 LINC00471Q8N535 108 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 TERB2Q8NHR7 220 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 DNAJC9Q8WXX5 260 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 RETNLBQ9BQ08 111 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 SLC39A9Q9NUM3 307 aa1.26□□□□□ -2.21
HMGB1P28-201ENST00000507778 TOPBP1Q92547 1522 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 IGKV3-7A0A075B6H7 116 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR5F1O95221 314 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 CNIH1O95406 144 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 TCRBP04435 133 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 RANP62826 216 aaKnown RBP1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 C10orf55Q5SWW7 151 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 ZNF826PQ6ZT77 177 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 DEFB128Q7Z7B8 93 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 BORCS7Q96B45 105 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 SERPINI1Q99574 410 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 C20orf27Q9GZN8 174 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR51V1Q9H2C8 321 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 SDK1Q7Z5N4 2213 aa1.25□□□□□ -2.21
HMGB1P28-201ENST00000507778 RIC1Q4ADV7 1423 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 FAM236DA0A1B0GTK5 79 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SMIM9A6NGZ8 99 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 BUB1B-PAK6H3BSN5 160 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 E2F6O75461 281 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SHBGP04278 402 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SMIM10L2AP0DMW4 78 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SMIM10L2BP0DMW5 78 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 FAM236CP0DP71 79 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 IL9P15248 144 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 G6PCP35575 357 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SRSF6Q13247 344 aaKnown RBP1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 EDDM3AQ14507 147 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 ZNF846Q147U1 533 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 SURF2Q15527 256 aaPredicted RBP1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 KHDC3LQ587J8 217 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 DPPA3Q6W0C5 159 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 KRT222Q8N1A0 295 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR4E2Q8NGC2 313 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR4D11Q8NGI4 311 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 CCDC90BQ9GZT6 254 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 DCSTAMPQ9H295 470 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 UCK1Q9HA47 277 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR5AC2Q9NZP5 309 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 CRCT1Q9UGL9 99 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 ERGIC3Q9Y282 383 aa1.24□□□□□ -2.21
HMGB1P28-201ENST00000507778 ROBO3Q96MS0 1386 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 PTPRBP23467 1997 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 CUL9Q8IWT3 2517 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 RTTNQ86VV8 2226 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 MALRD1Q5VYJ5 2156 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 IGKV1D-42A0A075B6H8 117 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 A0A087WUJ7 227 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 A0A0D9SG52 128 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 TMEM114B3SHH9 223 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 RBP1P09455 135 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 CRYGAP11844 174 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 COX6A1P12074 109 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 FKBP2P26885 142 aaKnown RBP1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 CDC42P60953 191 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 IAH1Q2TAA2 248 aaPredicted RBP1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 Q6ZQT0 140 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR6V1Q8N148 313 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 HIST3H2BBQ8N257 126 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 SIGLECL1Q8N7X8 197 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 C12orf29Q8N999 325 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 C15orf53Q8NAA6 179 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 OR5A1Q8NGJ0 315 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 REG4Q9BYZ8 158 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 TRIM4Q9C037 500 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 SLC22A13Q9Y226 551 aa1.23□□□□□ -2.21
HMGB1P28-201ENST00000507778 HECW2Q9P2P5 1572 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 TRAV14DV4A0A0A6YYC5 116 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 hADV38S2A0JD32 116 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 TCL1BO95988 128 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 CTSDP07339 412 aaPredicted RBP1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 SPI1P17947 270 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 S100A4P26447 101 aaKnown RBP1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 CDK10Q15131 360 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 SPANXN5Q5MJ07 72 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 GDPD1Q8N9F7 314 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 ZNF565Q8N9K5 539 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 CT55Q8WUE5 264 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 SLC50A1Q9BRV3 221 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 GLTPQ9NZD2 209 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 PRELID3BQ9Y3B1 194 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 NEO1Q92859 1461 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 NCOA1Q15788 1441 aa1.22□□□□□ -2.21
HMGB1P28-201ENST00000507778 PTPRSQ13332 1948 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 OR2J2O76002 312 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 S100A6P06703 90 aa1.21□□□□□ -2.22
HMGB1P28-201ENST00000507778 HIST1H3AP68431 136 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms