RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 CISHQ9NSE2 258 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 TAS2R4Q9NYW5 299 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 MAST2Q6P0Q8 1798 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 MUC5ACP98088 5654 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 LRRN3E7EW58 273 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 M0QZ92 97 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 CXCR6O00574 342 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 ACOX3O15254 700 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 OR2B3O76000 313 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 PROSCO94903 275 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 UBL3O95164 117 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 TCL1BO95988 128 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 CTSDP07339 412 aaPredicted RBP0.28□□□□□ -2.36
VPS50-217ENST00000485140 MIFP14174 115 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 SRSF6Q13247 344 aaKnown RBP0.28□□□□□ -2.36
VPS50-217ENST00000485140 TMED1Q13445 227 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 RHEBQ15382 184 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 KISS1Q15726 138 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 MIR17HGQ75NE6 70 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 Q8N6K4 173 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 OR13C4Q8NGS5 318 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 MRPL30Q8TCC3 161 aaKnown RBP0.28□□□□□ -2.36
VPS50-217ENST00000485140 SFT2D1Q8WV19 159 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 DNAJC9Q8WXX5 260 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 BORCS5Q969J3 196 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 COMMD5Q9GZQ3 224 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 USE1Q9NZ43 259 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 LSM5Q9Y4Y9 91 aaKnown RBP0.28□□□□□ -2.36
VPS50-217ENST00000485140 RALGAPA2Q2PPJ7 1873 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 CCDC88AQ3V6T2 1871 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 PIK3R4Q99570 1358 aa0.28□□□□□ -2.36
VPS50-217ENST00000485140 APCP25054 2843 aa0.28□□□□□ -2.37
VPS50-217ENST00000485140 TRBV6-8A0A0A6YYG3 113 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 NCR3O14931 201 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 INE1O15225 51 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 IFNA10P01566 189 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 COX5BP10606 129 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 HBA1P69905 142 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 LPCAT3Q6P1A2 487 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 FAM151BQ6UXP7 276 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 CLVS1Q8IUQ0 354 aaPredicted RBP0.27□□□□□ -2.37
VPS50-217ENST00000485140 LRRC25Q8N386 305 aaPredicted RBP0.27□□□□□ -2.37
VPS50-217ENST00000485140 OR5A1Q8NGJ0 315 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 RAB8BQ92930 207 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 NHP2Q9NX24 153 aaKnown RBP0.27□□□□□ -2.37
VPS50-217ENST00000485140 TOPBP1Q92547 1522 aa0.27□□□□□ -2.37
VPS50-217ENST00000485140 TRAV1-1A0A0B4J248 108 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 PQLC2LA1A4F0 135 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 EVPLLA8MZ36 301 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 H0Y980 276 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 SULT1B1O43704 296 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 DEXIO95424 95 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 CRYGAP11844 174 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 RPS12P25398 132 aaKnown RBP0.26□□□□□ -2.37
VPS50-217ENST00000485140 SSR2P43308 183 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 MAGEA2P43356 314 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 AP2S1P53680 142 aaPredicted RBP0.26□□□□□ -2.37
VPS50-217ENST00000485140 RAB5BP61020 215 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 PMAIP1Q13794 54 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 MPV17LQ2QL34 196 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 TMEM70Q9BUB7 260 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 SLC39A9Q9NUM3 307 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 COL4A5P29400 1685 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 KIF13BQ9NQT8 1826 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 ZFC3H1O60293 1989 aaKnown RBP0.26□□□□□ -2.37
VPS50-217ENST00000485140 TNRC6AQ8NDV7 1962 aaKnown RBP0.26□□□□□ -2.37
VPS50-217ENST00000485140 KMT2DO14686 5537 aa0.26□□□□□ -2.37
VPS50-217ENST00000485140 CNTRLQ7Z7A1 2325 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 PEAK1Q9H792 1746 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 ADGRB2O60241 1585 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 C9orf84Q5VXU9 1444 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 EVC2Q86UK5 1308 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 INMT-MINDY4F8WBC2 141 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 M0QX08 132 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 DCTN3O75935 186 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 IGKV1-5P01602 117 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 ISG15P05161 165 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 MGST1P10620 155 aaKnown RBP0.25□□□□□ -2.37
VPS50-217ENST00000485140 RNASE10Q5GAN6 216 aaKnown RBP0.25□□□□□ -2.37
VPS50-217ENST00000485140 HIST2H3PS2Q5TEC6 136 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 TEX261Q6UWH6 196 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 SOSTDC1Q6X4U4 206 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 C20orf196Q8IYI0 205 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 HIST3H2BBQ8N257 126 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 TMEM156Q8N614 296 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 ITFG2Q969R8 447 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 IMP4Q96G21 291 aaKnown RBP0.25□□□□□ -2.37
VPS50-217ENST00000485140 PRTFDC1Q9NRG1 225 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 CDC42SE1Q9NRR8 79 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 SLC35A3Q9Y2D2 325 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 U3KQ87 197 aa0.25□□□□□ -2.37
VPS50-217ENST00000485140 MACF1Q9UPN3 7388 aaKnown RBP0.25□□□□□ -2.37
VPS50-217ENST00000485140 SYNE2Q8WXH0 6885 aaKnown RBP0.24□□□□□ -2.37
VPS50-217ENST00000485140 MTUS2Q5JR59 1369 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 MED12Q93074 2177 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 TRAV9-1A0A075B6T8 112 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 TRAV12-1A0A0B4J245 112 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 SNRNP200O75643 2136 aaKnown RBP0.24□□□□□ -2.37
VPS50-217ENST00000485140 HLA-DRB1P01911 266 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 OR5G3P0C626 314 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms