RNA–Protein interactions for RNA: ENST00000484986.1

PTPRN-215, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 545 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-215ENST00000484986 FAM90A2PQ658T7 463 aa16.28■□□□□ 0.2
PTPRN-215ENST00000484986 PINX1Q96BK5 328 aaKnown RBP16.28■□□□□ 0.2
PTPRN-215ENST00000484986 ZNF414Q96IQ9 312 aa16.28■□□□□ 0.2
PTPRN-215ENST00000484986 APOA1P02647 267 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 RCVRNP35243 200 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 LSM3P62310 102 aaKnown RBP16.27■□□□□ 0.2
PTPRN-215ENST00000484986 LGALS9CQ6DKI2 356 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 DUSP18Q8NEJ0 188 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 MRGPRFQ96AM1 343 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 YIPF6Q96EC8 236 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 FRAS1Q86XX4 4008 aa16.27■□□□□ 0.2
PTPRN-215ENST00000484986 DFFBO76075 338 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 IGKV1-39P01597 117 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 IGKV1D-39P04432 117 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 ZNF124Q15973 351 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 TCF24Q7RTU0 167 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 GBGT1Q8N5D6 347 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 C11orf45Q8TAV5 145 aa16.26■□□□□ 0.19
PTPRN-215ENST00000484986 C11orf68Q9H3H3 251 aaKnown RBP16.26■□□□□ 0.19
PTPRN-215ENST00000484986 TNFAIP8O95379 198 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 IGHV3-48P01763 117 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 IFNA4P05014 189 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 SNCAP37840 140 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 TOMM20LQ6UXN7 152 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 OR11H2Q8NH07 326 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 TMEM231Q9H6L2 316 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 COMMD3Q9UBI1 195 aa16.25■□□□□ 0.19
PTPRN-215ENST00000484986 IGHV3OR16-13A0A075B7E8 117 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 A0A087WXM4 84 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 IGHV3-74A0A0B4J1X5 117 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 TRAV2A0A0B4J234 112 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 DNASE2O00115 360 aaPredicted RBP16.24■□□□□ 0.19
PTPRN-215ENST00000484986 ST8SIA3O43173 380 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 ATG12O94817 140 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 RBMS2Q15434 407 aaKnown RBP16.24■□□□□ 0.19
PTPRN-215ENST00000484986 ZNF600Q6ZNG1 722 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 SNX29P2Q8IUI4 249 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 VSIRQ9H7M9 311 aa16.24■□□□□ 0.19
PTPRN-215ENST00000484986 INS-IGF2F8WCM5 200 aa16.23■□□□□ 0.19
PTPRN-215ENST00000484986 CORTO00230 105 aa16.23■□□□□ 0.19
PTPRN-215ENST00000484986 CA1P00915 261 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-215ENST00000484986 SUB1P53999 127 aaKnown RBP eCLIP16.23■□□□□ 0.19
PTPRN-215ENST00000484986 RPP25LQ8N5L8 163 aaKnown RBP16.23■□□□□ 0.19
PTPRN-215ENST00000484986 ST8SIA2Q92186 375 aa16.23■□□□□ 0.19
PTPRN-215ENST00000484986 ZNF486Q96H40 463 aaPredicted RBP16.23■□□□□ 0.19
PTPRN-215ENST00000484986 MS4A6AQ9H2W1 248 aa16.23■□□□□ 0.19
PTPRN-215ENST00000484986 RND3P61587 244 aa16.22■□□□□ 0.19
PTPRN-215ENST00000484986 RPL11P62913 178 aaKnown RBP16.22■□□□□ 0.19
PTPRN-215ENST00000484986 TMEM187Q14656 261 aa16.22■□□□□ 0.19
PTPRN-215ENST00000484986 SLC35G3Q8N808 338 aa16.22■□□□□ 0.19
PTPRN-215ENST00000484986 PDCD10Q9BUL8 212 aa16.22■□□□□ 0.19
PTPRN-215ENST00000484986 PUS1Q9Y606 427 aaKnown RBP eCLIP16.22■□□□□ 0.19
PTPRN-215ENST00000484986 SCGB2A1O75556 95 aa16.21■□□□□ 0.19
PTPRN-215ENST00000484986 IFNA17P01571 189 aa16.21■□□□□ 0.19
PTPRN-215ENST00000484986 PGAM2P15259 253 aa16.21■□□□□ 0.19
PTPRN-215ENST00000484986 TCTAP57738 103 aa16.21■□□□□ 0.19
PTPRN-215ENST00000484986 NANOS2P60321 138 aaKnown RBP16.21■□□□□ 0.19
PTPRN-215ENST00000484986 FBXL17Q9UF56 701 aa16.21■□□□□ 0.19
PTPRN-215ENST00000484986 A0A1W2PS18 150 aa16.2■□□□□ 0.18
PTPRN-215ENST00000484986 AKR1C2P52895 323 aa16.2■□□□□ 0.18
PTPRN-215ENST00000484986 DEFB131AP59861 70 aa16.2■□□□□ 0.18
PTPRN-215ENST00000484986 ZFAND3Q9H8U3 227 aa16.2■□□□□ 0.18
PTPRN-215ENST00000484986 M0QYG6 137 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 TMEM50AO95807 157 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 APOHP02749 345 aaPredicted RBP16.19■□□□□ 0.18
PTPRN-215ENST00000484986 NPPCP23582 126 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 PIGPP57054 158 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 TMEM41BQ5BJD5 291 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 SPINK9Q5DT21 86 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 STHQ8IWL8 128 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 C2CD4CQ8TF44 421 aa16.19■□□□□ 0.18
PTPRN-215ENST00000484986 DNAH10Q8IVF4 4471 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 A0A0B4J293 547 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 IGHV3-66A0A0C4DH42 116 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 DEDDO75618 318 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 IGKV1-5P01602 117 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 ELK1P19419 428 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 NCS1P62166 190 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 IZUMO4Q1ZYL8 232 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 RNASE10Q5GAN6 216 aaKnown RBP16.18■□□□□ 0.18
PTPRN-215ENST00000484986 LEMD1Q68G75 181 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 PVRIGQ6DKI7 326 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 LILRB2Q8N423 598 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 ARRDC1Q8N5I2 433 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 METTL26Q96S19 204 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 ENY2Q9NPA8 101 aa16.18■□□□□ 0.18
PTPRN-215ENST00000484986 HPGDSO60760 199 aa16.17■□□□□ 0.18
PTPRN-215ENST00000484986 TBPP20226 339 aa16.17■□□□□ 0.18
PTPRN-215ENST00000484986 LHFPL1Q86WI0 220 aa16.17■□□□□ 0.18
PTPRN-215ENST00000484986 NARS2Q96I59 477 aaKnown RBP16.17■□□□□ 0.18
PTPRN-215ENST00000484986 TP53RKQ96S44 253 aa16.17■□□□□ 0.18
PTPRN-215ENST00000484986 RABAC1Q9UI14 185 aa16.17■□□□□ 0.18
PTPRN-215ENST00000484986 C3orf85A0A1B0GTC6 90 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 A0A1B0GU03 582 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 P0C879 139 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 PI3P19957 117 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 HOXA1P49639 335 aaPredicted RBP16.16■□□□□ 0.18
PTPRN-215ENST00000484986 RORCP51449 518 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 TRIM16LQ309B1 348 aa16.16■□□□□ 0.18
PTPRN-215ENST00000484986 MZT2AQ6P582 158 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms