RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RPP25LQ8N5L8 163 aaKnown RBP10.69□□□□□ -0.7
SDC1-204ENST00000429035 SLC35G3Q8N808 338 aa10.69□□□□□ -0.7
SDC1-204ENST00000429035 SEC22AQ96IW7 307 aa10.69□□□□□ -0.7
SDC1-204ENST00000429035 RARRES2Q99969 163 aa10.69□□□□□ -0.7
SDC1-204ENST00000429035 GINS3Q9BRX5 216 aa10.69□□□□□ -0.7
SDC1-204ENST00000429035 NXF2Q9GZY0 626 aaKnown RBP10.69□□□□□ -0.7
SDC1-204ENST00000429035 SMIM31A0A1B0GVY4 71 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 M0QYG6 137 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 DNASE2O00115 360 aaPredicted RBP10.68□□□□□ -0.7
SDC1-204ENST00000429035 IGKV1-39P01597 117 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 IGKV1D-39P04432 117 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 AKR1C2P52895 323 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 NANOS2P60321 138 aaKnown RBP10.68□□□□□ -0.7
SDC1-204ENST00000429035 LEMD1Q68G75 181 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 LYSMD2Q8IV50 215 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 OR11H2Q8NH07 326 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 GPX8Q8TED1 209 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 ST8SIA2Q92186 375 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 YIPF6Q96EC8 236 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 ZNF414Q96IQ9 312 aa10.68□□□□□ -0.7
SDC1-204ENST00000429035 DEFB4AO15263 64 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 ATF4P18848 351 aaPredicted RBP10.67□□□□□ -0.7
SDC1-204ENST00000429035 PI3P19957 117 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 HOXA1P49639 335 aaPredicted RBP10.67□□□□□ -0.7
SDC1-204ENST00000429035 CMC4P56277 68 aaPredicted RBP10.67□□□□□ -0.7
SDC1-204ENST00000429035 RBMS2Q15434 407 aaKnown RBP10.67□□□□□ -0.7
SDC1-204ENST00000429035 CADM3Q8N126 398 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 ZNF114Q8NC26 417 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 RNASE11Q8TAA1 199 aaKnown RBP10.67□□□□□ -0.7
SDC1-204ENST00000429035 GATAD1Q8WUU5 269 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 OR10C1Q96KK4 312 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 TXN2Q99757 166 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 PDCD10Q9BUL8 212 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 RABAC1Q9UI14 185 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 PUS1Q9Y606 427 aaKnown RBP eCLIP10.67□□□□□ -0.7
SDC1-204ENST00000429035 KMT2AQ03164 3969 aa10.67□□□□□ -0.7
SDC1-204ENST00000429035 FAM25AB3EWG3 89 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 FAM25CB3EWG5 89 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 FAM25GB3EWG6 89 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 HPGDSO60760 199 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 IFNA17P01571 189 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 SNCAP37840 140 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 NPBWR1P48145 328 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 PPP5CP53041 499 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 DEFB131AP59861 70 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 HSPE1P61604 102 aaKnown RBP10.66□□□□□ -0.7
SDC1-204ENST00000429035 NCS1P62166 190 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 TOMM20LQ6UXN7 152 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 DUSP18Q8NEJ0 188 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 C11orf45Q8TAV5 145 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 SCPEP1Q9HB40 452 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 FAM212BQ9NTI7 297 aaPredicted RBP10.66□□□□□ -0.7
SDC1-204ENST00000429035 FRAS1Q86XX4 4008 aa10.66□□□□□ -0.7
SDC1-204ENST00000429035 AGRNO00468 2067 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 A0A087WXM4 84 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 APOA1P02647 267 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 APOHP02749 345 aaPredicted RBP10.65□□□□□ -0.7
SDC1-204ENST00000429035 IFNA4P05014 189 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 VBP1P61758 197 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 TRIM16LQ309B1 348 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 FAM90A2PQ658T7 463 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 ZNF600Q6ZNG1 722 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 MFFQ9GZY8 342 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 MS4A6AQ9H2W1 248 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 ENY2Q9NPA8 101 aa10.65□□□□□ -0.7
SDC1-204ENST00000429035 DFFBO76075 338 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 ELK1P19419 428 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 OPRK1P41145 380 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 UCP3P55916 312 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 PIGPP57054 158 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 TMEM187Q14656 261 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 RNASE10Q5GAN6 216 aaKnown RBP10.64□□□□□ -0.71
SDC1-204ENST00000429035 STHQ8IWL8 128 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 FAM24BQ8N5W8 94 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 STXBP6Q8NFX7 210 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 C11orf68Q9H3H3 251 aaKnown RBP10.64□□□□□ -0.71
SDC1-204ENST00000429035 TMEM231Q9H6L2 316 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 ZFAND3Q9H8U3 227 aa10.64□□□□□ -0.71
SDC1-204ENST00000429035 TNFAIP8O95379 198 aa10.63□□□□□ -0.71
SDC1-204ENST00000429035 IGKV1-5P01602 117 aa10.63□□□□□ -0.71
SDC1-204ENST00000429035 LILRB2Q8N423 598 aa10.63□□□□□ -0.71
SDC1-204ENST00000429035 TP53RKQ96S44 253 aa10.63□□□□□ -0.71
SDC1-204ENST00000429035 VSIRQ9H7M9 311 aa10.63□□□□□ -0.71
SDC1-204ENST00000429035 SCGB2A1O75556 95 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 CD5P06127 495 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 SUB1P53999 127 aaKnown RBP eCLIP10.62□□□□□ -0.71
SDC1-204ENST00000429035 RND3P61587 244 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 LGALS9CQ6DKI2 356 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 NARS2Q96I59 477 aaKnown RBP10.62□□□□□ -0.71
SDC1-204ENST00000429035 METTL26Q96S19 204 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 FUNDC2Q9BWH2 189 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 COPZ2Q9P299 210 aa10.62□□□□□ -0.71
SDC1-204ENST00000429035 C3orf85A0A1B0GTC6 90 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 A0A1B0GU03 582 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 CORTO00230 105 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 ATG12O94817 140 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 ZNF688P0C7X2 276 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 RNASE2P10153 161 aaKnown RBP10.61□□□□□ -0.71
SDC1-204ENST00000429035 ETV6P41212 452 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 SP6Q3SY56 376 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms