RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 MISP3Q96FF7 219 aa12.84□□□□□ -0.35
SNRPA1-202ENST00000394082 VSIRQ9H7M9 311 aa12.84□□□□□ -0.35
SNRPA1-202ENST00000394082 GNG7O60262 68 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 IGKV1-39P01597 117 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 IGKV1D-39P04432 117 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 HLA-DMAP28067 261 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 TSPAN5P62079 268 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 PHLDA2Q53GA4 152 aa12.83□□□□□ -0.36
SNRPA1-202ENST00000394082 APOA1P02647 267 aa12.82□□□□□ -0.36
SNRPA1-202ENST00000394082 NPBWR1P48145 328 aa12.82□□□□□ -0.36
SNRPA1-202ENST00000394082 PVRIGQ6DKI7 326 aa12.82□□□□□ -0.36
SNRPA1-202ENST00000394082 C11orf45Q8TAV5 145 aa12.82□□□□□ -0.36
SNRPA1-202ENST00000394082 DNAH10Q8IVF4 4471 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 SMIM31A0A1B0GVY4 71 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 EIF4EP06730 217 aaKnown RBP12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 RCVRNP35243 200 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 TGFBR1P36897 503 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 LSM3P62310 102 aaKnown RBP12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 ZNF124Q15973 351 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 TOMM20LQ6UXN7 152 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 TCF24Q7RTU0 167 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 RPP25LQ8N5L8 163 aaKnown RBP12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 DUSP18Q8NEJ0 188 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 OR11H2Q8NH07 326 aa12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 ZNF486Q96H40 463 aaPredicted RBP12.81□□□□□ -0.36
SNRPA1-202ENST00000394082 CORTO00230 105 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 IFNA4P05014 189 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 SMIM18P0DKX4 95 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 TFPI2P48307 235 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 RND3P61587 244 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 RBMS2Q15434 407 aaKnown RBP12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 ZNF600Q6ZNG1 722 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 MRGPRFQ96AM1 343 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 FUNDC2Q9BWH2 189 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 MRPS26Q9BYN8 205 aaKnown RBP12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 TMEM231Q9H6L2 316 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 VPS13DQ5THJ4 4388 aa12.8□□□□□ -0.36
SNRPA1-202ENST00000394082 IGHV3-49A0A0A0MS15 119 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 TMEM187Q14656 261 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 TMEM41BQ5BJD5 291 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 GBGT1Q8N5D6 347 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 ST8SIA2Q92186 375 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 PINX1Q96BK5 328 aaKnown RBP12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 MS4A6AQ9H2W1 248 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 HRH4Q9H3N8 390 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 ZFAND3Q9H8U3 227 aa12.79□□□□□ -0.36
SNRPA1-202ENST00000394082 IGKV3-7A0A075B6H7 116 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 ST8SIA3O43173 380 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 ATG12O94817 140 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 TMEM50AO95807 157 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 CA1P00915 261 aaPredicted RBP12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 P0C879 139 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 SNCAP37840 140 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 C2CD4CQ8TF44 421 aa12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 PUS1Q9Y606 427 aaKnown RBP eCLIP12.78□□□□□ -0.36
SNRPA1-202ENST00000394082 A0A1W2PS18 150 aa12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 DNASE2O00115 360 aaPredicted RBP12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 IGHV3-48P01763 117 aa12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 SUB1P53999 127 aaKnown RBP eCLIP12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 NANOS2P60321 138 aaKnown RBP12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 LILRB2Q8N423 598 aa12.77□□□□□ -0.37
SNRPA1-202ENST00000394082 HECTD4Q9Y4D8 3996 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 IGHV3OR16-13A0A075B7E8 117 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 IGHV3-74A0A0B4J1X5 117 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 A0A0B4J293 547 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 C11orf94C9JXX5 98 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 DEDDO75618 318 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 APOHP02749 345 aaPredicted RBP12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 NPPCP23582 126 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 RPL5P46777 297 aaKnown RBP12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 DEFB131AP59861 70 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 NCS1P62166 190 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 LHFPL1Q86WI0 220 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 ARRDC1Q8N5I2 433 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 GRAMD2BQ96HH9 432 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 COMMD3Q9UBI1 195 aa12.76□□□□□ -0.37
SNRPA1-202ENST00000394082 A0A1B0GU03 582 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 SCGB2A1O75556 95 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 B3GALNT1O75752 331 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 IGKV1-5P01602 117 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 TBPP20226 339 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 CRYBB3P26998 211 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 VBP1P61758 197 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 GPR141Q7Z602 305 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 SNX29P2Q8IUI4 249 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 STHQ8IWL8 128 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 SLC35G3Q8N808 338 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 OR4X1Q8NH49 305 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 FBXL17Q9UF56 701 aa12.75□□□□□ -0.37
SNRPA1-202ENST00000394082 CLN5O75503 358 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 RNASE2P10153 161 aaKnown RBP12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 SPP1P10451 314 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 PIGPP57054 158 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 RPL11P62913 178 aaKnown RBP12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 BSXQ3C1V8 233 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 MORN3Q6PF18 240 aaPredicted RBP12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 Q8NAQ8 132 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 PDCD10Q9BUL8 212 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 DNAH6Q9C0G6 4158 aa12.74□□□□□ -0.37
SNRPA1-202ENST00000394082 HERC2O95714 4834 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms