RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 IGKV1D-33P01593 117 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 IGKV1-33P01594 117 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 IGKV1-16P04430 117 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 SNRNP70P08621 437 aaKnown RBP8.16□□□□□ -1.1
VPS53-202ENST00000389040 DLX1P56177 255 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 RHEBQ15382 184 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 TPTE2P1Q5T6R2 138 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 RPP25LQ8N5L8 163 aaKnown RBP8.16□□□□□ -1.1
VPS53-202ENST00000389040 SIGLECL1Q8N7X8 197 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 ST6GALNAC6Q969X2 333 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 ZNF48Q96MX3 618 aaPredicted RBP8.16□□□□□ -1.1
VPS53-202ENST00000389040 C20orf24Q9BUV8 137 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 GGACTQ9BVM4 153 aa8.16□□□□□ -1.1
VPS53-202ENST00000389040 ZFP92A6NM28 416 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 RRHO14718 337 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 BCL2P10415 239 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 CD1BP29016 333 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 AKR1C3P42330 323 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 HSPE1P61604 102 aaKnown RBP8.15□□□□□ -1.1
VPS53-202ENST00000389040 HABP2Q14520 560 aaPredicted RBP8.15□□□□□ -1.1
VPS53-202ENST00000389040 SSX2Q16385 188 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 KRTAP21-3Q3LHN1 58 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 FFAR4Q5NUL3 377 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 CYB561D1Q8N8Q1 229 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 OR10G4Q8NGN3 311 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 C22orf15Q8WYQ4 148 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 MRPL20Q9BYC9 149 aaKnown RBP8.15□□□□□ -1.1
VPS53-202ENST00000389040 SLC39A9Q9NUM3 307 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 PRNDQ9UKY0 176 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 WDR83OSQ9Y284 106 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 OR51B2Q9Y5P1 312 aa8.15□□□□□ -1.1
VPS53-202ENST00000389040 CTXND1A0A1B0GTU2 59 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 PRSS46E5RG02 174 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 H7C2Y5 167 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 APOA2P02652 100 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 RNASE1P07998 156 aaKnown RBP8.15□□□□□ -1.11
VPS53-202ENST00000389040 IL6RP08887 468 aaPredicted RBP8.15□□□□□ -1.11
VPS53-202ENST00000389040 PAX6P26367 422 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 CEBPGP53567 150 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 RAB11AP62491 216 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 LHFPL4Q7Z7J7 247 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 OR10G9Q8NGN4 311 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 OR10G7Q8NGN6 311 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 TMEM170AQ8WVE7 144 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 SSX3Q99909 188 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 ENY2Q9NPA8 101 aa8.15□□□□□ -1.11
VPS53-202ENST00000389040 PUS1Q9Y606 427 aaKnown RBP eCLIP8.15□□□□□ -1.11
VPS53-202ENST00000389040 TET2Q6N021 2002 aaPredicted RBP8.14□□□□□ -1.11
VPS53-202ENST00000389040 A0A1W2PRD5 423 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 A0A1W2PRF3 423 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 A0A1W2PRM7 423 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 SMCO3A2RU48 225 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 SRRM4A7MD48 611 aaKnown RBP8.14□□□□□ -1.11
VPS53-202ENST00000389040 UPK2O00526 184 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 MPDU1O75352 247 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 IFNA1P01562 189 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 FAM106CPP0CH98 169 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 PRB3Q04118 309 aaPredicted RBP8.14□□□□□ -1.11
VPS53-202ENST00000389040 PMS2P11Q13670 270 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 C16orf82Q7Z2V1 217 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 SLC24A4Q8NFF2 622 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 OSR1Q8TAX0 266 aaPredicted RBP8.14□□□□□ -1.11
VPS53-202ENST00000389040 ACTR3CQ9C0K3 210 aaPredicted RBP8.14□□□□□ -1.11
VPS53-202ENST00000389040 SLC25A22Q9H936 323 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 VPREB3Q9UKI3 123 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 ZNF257Q9Y2Q1 563 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 NF1P21359 2839 aa8.14□□□□□ -1.11
VPS53-202ENST00000389040 COLCA2A8K830 154 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 H0YJW9 148 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 H3BQ15 152 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 HOXA3O43365 443 aaPredicted RBP8.13□□□□□ -1.11
VPS53-202ENST00000389040 SOX15O60248 233 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 IFNA4P05014 189 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 NPY1RP25929 384 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 DLK1P80370 383 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 LDLRAD2Q5SZI1 272 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 TGIF2LXQ8IUE1 241 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 C15orf54Q8N8G6 183 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 OR5AN1Q8NGI8 311 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 P2RX4Q99571 388 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 TUBA4BQ9H853 241 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 PLEKHA3Q9HB20 300 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 BET1LQ9NYM9 111 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 VAX2Q9UIW0 290 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 HILPDAQ9Y5L2 63 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 DNAJC9-AS1A6NH13 148 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 EIF3GO75821 320 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS53-202ENST00000389040 KBTBD11O94819 623 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 SAA1P0DJI8 122 aaPredicted RBP8.13□□□□□ -1.11
VPS53-202ENST00000389040 MYOD1P15172 320 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 MC5RP33032 325 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 REG1BP48304 166 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 PRCDQ00LT1 54 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 ACOT6Q3I5F7 207 aaPredicted RBP8.13□□□□□ -1.11
VPS53-202ENST00000389040 FAM122CQ6P4D5 195 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 TREML4Q6UXN2 200 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 HARBI1Q96MB7 349 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 NIPSNAP3BQ9BS92 247 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 HINT2Q9BX68 163 aa8.13□□□□□ -1.11
VPS53-202ENST00000389040 FKBP11Q9NYL4 201 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms