RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 P2RX4Q99571 388 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 PHB2Q99623 299 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 F8W735 103 aaPredicted RBP7.2□□□□□ -1.26
VPS35-211ENST00000569950 SIX6O95475 246 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 DHFRP00374 187 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 ELANEP08246 267 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 OR13C7P0DN81 318 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 RAB9AP51151 201 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 PAX9P55771 341 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 SPCS3P61009 180 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 TEX38Q6PEX7 206 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 ETV3LQ6ZN32 361 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 CENPVQ7Z7K6 275 aaPredicted RBP7.2□□□□□ -1.26
VPS35-211ENST00000569950 OR11H7Q8NGC8 314 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 OR5M8Q8NGP6 311 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 ABHD5Q8WTS1 349 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 RBKSQ9H477 322 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 GNB4Q9HAV0 340 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 FKBP11Q9NYL4 201 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 RCL1Q9Y2P8 373 aaKnown RBP7.2□□□□□ -1.26
VPS35-211ENST00000569950 DNAH3Q8TD57 4116 aa7.2□□□□□ -1.26
VPS35-211ENST00000569950 FAM90A26D6RGX4 464 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 H3BUA1 57 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 I3L521 148 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 ACTL6BO94805 426 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 MBPP02686 304 aaPredicted RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 RPL23AP62750 156 aaKnown RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 TMEM267Q0VDI3 215 aaPredicted RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 FCN2Q15485 313 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 ARSJQ5FYB0 599 aaPredicted RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 THOC7Q6I9Y2 204 aaKnown RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 Q6ZNX1 250 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 COMMD1Q8N668 190 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 RNASE11Q8TAA1 199 aaKnown RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 MS4A10Q96PG2 267 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 HINT2Q9BX68 163 aa7.19□□□□□ -1.26
VPS35-211ENST00000569950 GPN1Q9HCN4 374 aaPredicted RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 F11RQ9Y624 299 aaKnown RBP7.19□□□□□ -1.26
VPS35-211ENST00000569950 MFSD2BA6NFX1 497 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 C15orf62A8K5M9 175 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 PRSS46E5RG02 174 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 G3V3Q6 166 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 H0YIZ8 118 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 I3L2K1 104 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 K7EIM0 57 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 NDUFB8O95169 186 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 TRBV12-3P01733 135 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 PF4V1P10720 104 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 CDX1P47902 265 aaPredicted RBP7.18□□□□□ -1.26
VPS35-211ENST00000569950 SLC35B1P78383 322 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 RHOGP84095 191 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 IAH1Q2TAA2 248 aaPredicted RBP7.18□□□□□ -1.26
VPS35-211ENST00000569950 C12orf54Q6X4T0 127 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 HSD17B13Q7Z5P4 300 aaPredicted RBP7.18□□□□□ -1.26
VPS35-211ENST00000569950 OR1P1Q8NH06 330 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 OR1S1Q8NH92 325 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 CCDC140Q96MF4 163 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 OR4C12Q96R67 309 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 GON7Q9BXV9 100 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 MAGT1Q9H0U3 335 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 FNDC4Q9H6D8 234 aaPredicted RBP7.18□□□□□ -1.26
VPS35-211ENST00000569950 PLEKHA3Q9HB20 300 aa7.18□□□□□ -1.26
VPS35-211ENST00000569950 MRPL36Q9P0J6 103 aaKnown RBP7.18□□□□□ -1.26
VPS35-211ENST00000569950 PMS2P5A8MQ11 134 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 GOSR2O14653 212 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 SYNGR2O43760 224 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 OR2J3O76001 311 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 IFNA17P01571 189 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 TRGV3P03979 118 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 POLR2GP62487 172 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS35-211ENST00000569950 RUNX1Q01196 453 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 FHL3Q13643 280 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 DEFB136Q30KP8 78 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 HAPLN4Q86UW8 402 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 UXS1Q8NBZ7 420 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 OR4X2Q8NGF9 303 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 CHAC2Q8WUX2 184 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 UBE2E2Q96LR5 201 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 C2orf50Q96LR7 162 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 SLA2Q9H6Q3 261 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 S4R3C0 116 aa7.17□□□□□ -1.26
VPS35-211ENST00000569950 PIGBOS1A0A0B4J2F0 54 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 C13orf42A0A1B0GVH6 325 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 TCRBV4S1A1TA0A5B7 111 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 K7EPK0 472 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 CCNKO75909 580 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 TSPAN15O95858 294 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 IFNA21P01568 189 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 IGHV3-11P01762 117 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 IAPPP10997 89 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 NKX2-1P43699 371 aaPredicted RBP7.16□□□□□ -1.26
VPS35-211ENST00000569950 HOXA1P49639 335 aaPredicted RBP7.16□□□□□ -1.26
VPS35-211ENST00000569950 TPPP2P59282 170 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 RRAS2P62070 204 aaPredicted RBP7.16□□□□□ -1.26
VPS35-211ENST00000569950 MLANAQ16655 118 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 C2orf83Q53S99 150 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 ZNF343Q6P1L6 599 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 SHISA2Q6UWI4 295 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 C8orf86Q6ZUL3 223 aa7.16□□□□□ -1.26
VPS35-211ENST00000569950 NDUFA11Q86Y39 141 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms