RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 DNASE2O00115 360 aaPredicted RBP8.36□□□□□ -1.07
CLK3-222ENST00000568232 NUPL2O15504 423 aaKnown RBP8.36□□□□□ -1.07
CLK3-222ENST00000568232 RGS10O43665 173 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 YIF1AO95070 293 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 IGLV2-14P01704 120 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 PAFAH1B2P68402 229 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 SLC25A24Q6NUK1 477 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 MORN3Q6PF18 240 aaPredicted RBP8.36□□□□□ -1.07
CLK3-222ENST00000568232 CLVS1Q8IUQ0 354 aaPredicted RBP8.36□□□□□ -1.07
CLK3-222ENST00000568232 SPARTQ8N0X7 666 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 BPIFB6Q8NFQ5 453 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 OR13F1Q8NGS4 319 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 OR4S2Q8NH73 311 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 SCARB1Q8WTV0 552 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 GPHA2Q96T91 129 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 C21orf62Q9NYP8 219 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 SPATA2Q9UM82 520 aa8.36□□□□□ -1.07
CLK3-222ENST00000568232 RBMX2Q9Y388 322 aaKnown RBP8.36□□□□□ -1.07
CLK3-222ENST00000568232 NACAE9PAV3 2078 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 TRAV14DV4A0A0A6YYC5 116 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 IGHV3-66A0A0C4DH42 116 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 DFFBO76075 338 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 APOHP02749 345 aaPredicted RBP8.35□□□□□ -1.07
CLK3-222ENST00000568232 CDK1P06493 297 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 CTSGP08311 255 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 SPP1P10451 314 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 MAPK3P27361 379 aaPredicted RBP8.35□□□□□ -1.07
CLK3-222ENST00000568232 Q56UQ5 140 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 TMEM41BQ5BJD5 291 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 CROCCP3Q8IVE0 287 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 TCTEX1D2Q8WW35 142 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 ST8SIA2Q92186 375 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 C18orf15Q96N68 181 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 HRASLSQ9HDD0 168 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 FKBP14Q9NWM8 211 aa8.35□□□□□ -1.07
CLK3-222ENST00000568232 AGRNO00468 2067 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 NBDYA0A0U1RRE5 68 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 PTGES3LE9PB15 166 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 CD37P11049 281 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 HTN3P15516 51 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 EMP1P54849 157 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 TAS2R43P59537 309 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 RPL11P62913 178 aaKnown RBP8.34□□□□□ -1.07
CLK3-222ENST00000568232 MRPS15P82914 257 aaKnown RBP8.34□□□□□ -1.07
CLK3-222ENST00000568232 NEDD8Q15843 81 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 TIMM50Q3ZCQ8 353 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 ACSM3Q53FZ2 586 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 AHSA2Q719I0 299 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 GDPD1Q8N9F7 314 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 TMEM80Q96HE8 168 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 OR10C1Q96KK4 312 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 CCDC90BQ9GZT6 254 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 PSORS1C1Q9UIG5 152 aa8.34□□□□□ -1.07
CLK3-222ENST00000568232 IGKV1D-13A0A0B4J2D9 117 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 K7EIM0 57 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 ST8SIA3O43173 380 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 DIRAS3O95661 229 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 HRASP01112 189 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 SERPINE2P07093 398 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 OR13C7P0DN81 318 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 IGKV1-13P0DP09 117 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 CD36P16671 472 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 NFYAP23511 347 aaPredicted RBP8.33□□□□□ -1.08
CLK3-222ENST00000568232 CLDN12P56749 244 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 WT1-ASQ06250 92 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 ST3GAL4Q11206 333 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 EIF4EBP1Q13541 118 aaPredicted RBP8.33□□□□□ -1.08
CLK3-222ENST00000568232 Q5VSD8 79 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 UBE2UQ5VVX9 321 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 MFSD4AQ8N468 514 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 FAM210BQ96KR6 192 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 GFI1Q99684 422 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 BET1LQ9NYM9 111 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 TAS2R8Q9NYW2 309 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 RABAC1Q9UI14 185 aa8.33□□□□□ -1.08
CLK3-222ENST00000568232 A0A075B6Q4 140 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 CD1AP06126 327 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 SPART-AS1P0CW21 52 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 GNB3P16520 340 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 TBCEQ15813 527 aaPredicted RBP8.32□□□□□ -1.08
CLK3-222ENST00000568232 ACTL10Q5JWF8 245 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 GPR107Q5VW38 600 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 OR56B1Q8NGI3 324 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 PHYHIPQ92561 330 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 COMMD5Q9GZQ3 224 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 RNF167Q9H6Y7 350 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 PLGRKTQ9HBL7 147 aa8.32□□□□□ -1.08
CLK3-222ENST00000568232 H3BMQ9 156 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 UPK2O00526 184 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 CYB5BO43169 146 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 HLA-DQB1P01920 261 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 RELQ04864 619 aaPredicted RBP8.31□□□□□ -1.08
CLK3-222ENST00000568232 TMEM88Q6PEY1 159 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 ZNF66Q6ZN08 573 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 LYPD1Q8N2G4 141 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 DUSP18Q8NEJ0 188 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 RAB3CQ96E17 227 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 ATP6V0BQ99437 205 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 HSD17B10Q99714 261 aaKnown RBP8.31□□□□□ -1.08
CLK3-222ENST00000568232 QTRT1Q9BXR0 403 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms