RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SLC2A8Q9NY64 477 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 CACFD1Q9UGQ2 172 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 UFC1Q9Y3C8 167 aa12.4□□□□□ -0.42
LSM1-205ENST00000523511 PIGBOS1A0A0B4J2F0 54 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 IFNA17P01571 189 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 HLA-AP01891 365 aaKnown RBP12.39□□□□□ -0.43
LSM1-205ENST00000523511 FOLR2P14207 255 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 GPR183P32249 361 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 TNFSF8P32971 234 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 SNCAP37840 140 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 SUB1P53999 127 aaKnown RBP eCLIP12.39□□□□□ -0.43
LSM1-205ENST00000523511 HAPLN4Q86UW8 402 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 ZNF502Q8TBZ5 544 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 BSCL2Q96G97 398 aaPredicted RBP12.39□□□□□ -0.43
LSM1-205ENST00000523511 CCDC140Q96MF4 163 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 TUBA4BQ9H853 241 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 ENY2Q9NPA8 101 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 C21orf62Q9NYP8 219 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 DMRT1Q9Y5R6 373 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 CEPT1Q9Y6K0 416 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 S4R3C0 116 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 U3KQK5 164 aa12.39□□□□□ -0.43
LSM1-205ENST00000523511 MFSD2BA6NFX1 497 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 C2orf70A6NJV1 201 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 CBLN1P23435 193 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 ELLP55199 621 aaPredicted RBP12.38□□□□□ -0.43
LSM1-205ENST00000523511 PRCDQ00LT1 54 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 FAM219AQ8IW50 185 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 WWC2-AS2Q96NR7 200 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 TP53RKQ96S44 253 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 ASCL2Q99929 193 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 THAP7Q9BT49 309 aaPredicted RBP12.38□□□□□ -0.43
LSM1-205ENST00000523511 NXF2Q9GZY0 626 aaKnown RBP12.38□□□□□ -0.43
LSM1-205ENST00000523511 MCUBQ9NWR8 336 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 DNAH3Q8TD57 4116 aa12.38□□□□□ -0.43
LSM1-205ENST00000523511 ANKRD20A5PA0PJZ0 165 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 A8MZ25 164 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 ZNF701M0R085 212 aaPredicted RBP12.37□□□□□ -0.43
LSM1-205ENST00000523511 TGOLN2O43493 480 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 IGKV1-39P01597 117 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 IGKV1D-39P04432 117 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 FRMD6-AS1P0C7T7 363 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 UCP1P25874 307 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 DEFB114Q30KQ6 69 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 ANKRD55Q3KP44 614 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 SP6Q3SY56 376 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 Q56UQ5 140 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 OR2C3Q8N628 320 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 SLC35G3Q8N808 338 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 SCARB1Q8WTV0 552 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 TXN2Q99757 166 aa12.37□□□□□ -0.43
LSM1-205ENST00000523511 MRPL27Q9P0M9 148 aaKnown RBP12.37□□□□□ -0.43
LSM1-205ENST00000523511 A8MWP6 167 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 NUPL2O15504 423 aaKnown RBP12.36□□□□□ -0.43
LSM1-205ENST00000523511 IGHV4-30-4P0DP06 118 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 MFAP4P55083 255 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 RELQ04864 619 aaPredicted RBP12.36□□□□□ -0.43
LSM1-205ENST00000523511 CD300EQ496F6 205 aaPredicted RBP12.36□□□□□ -0.43
LSM1-205ENST00000523511 PYDC2Q56P42 97 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 ZNF57Q68EA5 555 aaPredicted RBP12.36□□□□□ -0.43
LSM1-205ENST00000523511 C11orf87Q6NUJ2 197 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 UBAC2Q8NBM4 344 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 OR51S1Q8NGJ8 323 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 OR4C16Q8NGL9 310 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 DEDD2Q8WXF8 326 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 TMEM222Q9H0R3 208 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 NAA60Q9H7X0 242 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 GPR132Q9UNW8 380 aa12.36□□□□□ -0.43
LSM1-205ENST00000523511 OR2T8A6NH00 312 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 DBX1A6NMT0 343 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 CORTO00230 105 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 SCGB2A1O75556 95 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 CDS2O95674 445 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 ANXA3P12429 323 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 GUCA2BQ16661 112 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 FAAP20Q6NZ36 180 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 RBPMS2Q6ZRY4 209 aaKnown RBP12.35□□□□□ -0.43
LSM1-205ENST00000523511 SLC16A13Q7RTY0 426 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 Q8N1Y9 231 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 TOMM5Q8N4H5 51 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 UXS1Q8NBZ7 420 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 ZNF114Q8NC26 417 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 RBPMSQ93062 196 aaKnown RBP12.35□□□□□ -0.43
LSM1-205ENST00000523511 MISP3Q96FF7 219 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 SOSTQ9BQB4 213 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 RTBDNQ9BSG5 229 aaPredicted RBP12.35□□□□□ -0.43
LSM1-205ENST00000523511 ZC4H2Q9NQZ6 224 aa12.35□□□□□ -0.43
LSM1-205ENST00000523511 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.35□□□□□ -0.43
LSM1-205ENST00000523511 TRAV25A0A0B4J276 109 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 INS-IGF2F8WCM5 200 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 NDUFA4O00483 81 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 IGKV1-5P01602 117 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 OR5AC1P0C628 307 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 SPANXN2Q5MJ10 180 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 LAMTOR1Q6IAA8 161 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 SBSPONQ8IVN8 264 aa12.34□□□□□ -0.43
LSM1-205ENST00000523511 ZNF436Q9C0F3 470 aaPredicted RBP12.34□□□□□ -0.43
LSM1-205ENST00000523511 A0A0B4J293 547 aa12.33□□□□□ -0.44
LSM1-205ENST00000523511 CRYM-AS1A6NIL9 109 aa12.33□□□□□ -0.44
LSM1-205ENST00000523511 ST8SIA3O43173 380 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms