RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 CFHR3Q02985 330 aa13.45□□□□□ -0.26
LIME1-208ENST00000493265 FAM110DQ8TAY7 271 aaPredicted RBP13.45□□□□□ -0.26
LIME1-208ENST00000493265 TMEM68Q96MH6 324 aa13.45□□□□□ -0.26
LIME1-208ENST00000493265 FAM90A26D6RGX4 464 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 SYNGR2O43760 224 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 FBXO24O75426 580 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 MED6O75586 246 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 MBPP02686 304 aaPredicted RBP13.44□□□□□ -0.26
LIME1-208ENST00000493265 PPIFP30405 207 aaKnown RBP13.44□□□□□ -0.26
LIME1-208ENST00000493265 SNCAP37840 140 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 ID3Q02535 119 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 LRRC37A5PQ49AS3 106 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 KHDC1LQ5JSQ8 128 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 TMEM65Q6PI78 240 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 HSD17B13Q7Z5P4 300 aaPredicted RBP13.44□□□□□ -0.26
LIME1-208ENST00000493265 TTC9CQ8N5M4 171 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 SRSF8Q9BRL6 282 aaKnown RBP13.44□□□□□ -0.26
LIME1-208ENST00000493265 HIPK2Q9H2X6 1198 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 CACFD1Q9UGQ2 172 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 ZNF580Q9UK33 172 aa13.44□□□□□ -0.26
LIME1-208ENST00000493265 RCL1Q9Y2P8 373 aaKnown RBP13.44□□□□□ -0.26
LIME1-208ENST00000493265 A0A1B0GVG6 124 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 NPIPB5A8MRT5 1133 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 TRGV3P03979 118 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 CD28P10747 220 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 CTRB1P17538 263 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 SRSF4Q08170 494 aaKnown RBP13.43□□□□□ -0.26
LIME1-208ENST00000493265 RAB32Q13637 225 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 PDLIM3Q53GG5 364 aaPredicted RBP13.43□□□□□ -0.26
LIME1-208ENST00000493265 CTRB2Q6GPI1 263 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 SLC25A24Q6NUK1 477 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 TEX38Q6PEX7 206 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 OR2C3Q8N628 320 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 OR4X2Q8NGF9 303 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 KLK15Q9H2R5 256 aa13.43□□□□□ -0.26
LIME1-208ENST00000493265 PAIP2BQ9ULR5 123 aaKnown RBP13.43□□□□□ -0.26
LIME1-208ENST00000493265 K7EPK0 472 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 IFNA10P01566 189 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 IGLV1-40P01703 118 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 IGHG4P01861 327 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 TPPP2P59282 170 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 KRTAP10-3P60369 221 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 CYCSP99999 105 aaKnown RBP13.42□□□□□ -0.26
LIME1-208ENST00000493265 PRR31Q5SQ13 230 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 P2RX4Q99571 388 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 ZNF747Q9BV97 191 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 NMES1Q9C002 83 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 ZNF436Q9C0F3 470 aaPredicted RBP13.42□□□□□ -0.26
LIME1-208ENST00000493265 TRRAPQ9Y4A5 3859 aa13.42□□□□□ -0.26
LIME1-208ENST00000493265 H3BP45 60 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 L7N2F9 121 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 OR2J3O76001 311 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 RPLP1P05386 114 aaKnown RBP13.41□□□□□ -0.26
LIME1-208ENST00000493265 CRYGCP07315 174 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 VAMP2P63027 116 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 FOXE3Q13461 319 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 WFDC12Q8WWY7 111 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 MISP3Q96FF7 219 aa13.41□□□□□ -0.26
LIME1-208ENST00000493265 F11RQ9Y624 299 aaKnown RBP13.41□□□□□ -0.26
LIME1-208ENST00000493265 IGHV3-21A0A0B4J1V1 117 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 TCRBV4S1A1TA0A5B7 111 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 ELANEP08246 267 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 RNASE2P10153 161 aaKnown RBP13.4□□□□□ -0.26
LIME1-208ENST00000493265 RAB9AP51151 201 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 SUB1P53999 127 aaKnown RBP eCLIP13.4□□□□□ -0.26
LIME1-208ENST00000493265 MFAP2P55001 183 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 RHOGP84095 191 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 CD83Q01151 205 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 IL15RAQ13261 267 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 TCTEX1D4Q5JR98 221 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 SHISA2Q6UWI4 295 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 COMMD1Q8N668 190 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 SLC24A4Q8NFF2 622 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 WIPF2Q8TF74 440 aaPredicted RBP13.4□□□□□ -0.26
LIME1-208ENST00000493265 PSENENQ9NZ42 101 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 FBXL7Q9UJT9 491 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 DMRT1Q9Y5R6 373 aa13.4□□□□□ -0.26
LIME1-208ENST00000493265 TGP01266 2768 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 A0A1W2PRX2 142 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 INS-IGF2F8WCM5 200 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 NPY1RP25929 384 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 PSMB8P28062 276 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 HTR2BP41595 481 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 SPANXN5Q5MJ07 72 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 CHAC2Q8WUX2 184 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 PPP1R1CQ8WVI7 109 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 PINX1Q96BK5 328 aaKnown RBP13.39□□□□□ -0.27
LIME1-208ENST00000493265 FANCD2OSQ96PS1 177 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 CIB3Q96Q77 187 aaPredicted RBP13.39□□□□□ -0.27
LIME1-208ENST00000493265 OR5B12Q96R08 314 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 S4R3C0 116 aa13.39□□□□□ -0.27
LIME1-208ENST00000493265 H3BUA1 57 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 CYB5BO43169 146 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 NDUFB8O95169 186 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 TMEM50AO95807 157 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 IGHV3-11P01762 117 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 RLN2P04090 185 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 PVALBP20472 110 aaPredicted RBP13.38□□□□□ -0.27
LIME1-208ENST00000493265 BCAP31P51572 246 aa13.38□□□□□ -0.27
LIME1-208ENST00000493265 OR1P1Q8NH06 330 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms