RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 LRRC28Q86X40 367 aaPredicted RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 OR10D4PQ8NGN7 298 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 ARAP1Q96P48 1450 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 CACYBPQ9HB71 228 aaKnown RBP2.55□□□□□ -2
HMGB1P38-201ENST00000490557 PHLDA3Q9Y5J5 127 aa2.55□□□□□ -2
HMGB1P38-201ENST00000490557 KMT2EQ8IZD2 1858 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 FMN1Q68DA7 1419 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 CCDC160A6NGH7 325 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 A8MUU9 505 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 IGLL5B9A064 214 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 I3L521 148 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 RPS3P23396 243 aaKnown RBP eCLIP2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BOP23527 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 CASP1P29466 404 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BBP33778 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BDP58876 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 DNAJB13P59910 316 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BCP62807 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST2H2BEQ16778 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 SP6Q3SY56 376 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.54□□□□□ -2
HMGB1P38-201ENST00000490557 FAM104BQ5XKR9 115 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 AMTNQ6UX39 209 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 DAND5Q8N907 189 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 TMEM229BQ8NBD8 167 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 TSTD1Q8NFU3 115 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 OR11G2Q8NGC1 345 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 RBPMSQ93062 196 aaKnown RBP2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BHQ93079 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 IP6K3Q96PC2 410 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BNQ99877 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 HIST1H2BMQ99879 126 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 B9D2Q9BPU9 175 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 GABARAPL1Q9H0R8 117 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 OR2D2Q9H210 308 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 EFCAB1Q9HAE3 211 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 FAM60AQ9NP50 221 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 CKLFQ9UBR5 152 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 PCTPQ9UKL6 214 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 TRAPPC2LQ9UL33 140 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 MED31Q9Y3C7 131 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 ITGB4P16144 1822 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 MYO5BQ9ULV0 1848 aa2.54□□□□□ -2
HMGB1P38-201ENST00000490557 TRAV38-1A0A0B4J264 116 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 K7EM74 188 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 DLEU1O43261 78 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 IGHV1-46P01743 117 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 BCL2P10415 239 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 CCR2P41597 374 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 LPAR6P43657 344 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 CSN1S1P47710 185 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 RPS11P62280 158 aaKnown RBP eCLIP2.53□□□□□ -2
HMGB1P38-201ENST00000490557 RPL30P62888 115 aaKnown RBP2.53□□□□□ -2
HMGB1P38-201ENST00000490557 PSG9Q00887 426 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 FKBP1CQ5VVH2 108 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 RPL22L1Q6P5R6 122 aaKnown RBP2.53□□□□□ -2
HMGB1P38-201ENST00000490557 SSX8Q7RTT4 187 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 OR8I2Q8N0Y5 310 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 PACRGLQ8N7B6 248 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 TMEM105Q8N8V8 129 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 OR13C4Q8NGS5 318 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 H1FXQ92522 213 aaKnown RBP2.53□□□□□ -2
HMGB1P38-201ENST00000490557 RTL8AQ9BWD3 113 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 OR2H1Q9GZK4 316 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 POPDC3Q9HBV1 291 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 CALML5Q9NZT1 146 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 RBM7Q9Y580 266 aaKnown RBP2.53□□□□□ -2
HMGB1P38-201ENST00000490557 U3KQ87 197 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 NAV1Q8NEY1 1877 aa2.53□□□□□ -2
HMGB1P38-201ENST00000490557 MYH3P11055 1940 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 BCL9O00512 1426 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 TRAV41A0A0B4J266 112 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 LOC102725191A0A1B0GVB3 256 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 A6NED7 52 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 ATP6V1G2-DDX39BF2Z307 99 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 M0R2Z0 102 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 CDS2O95674 445 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 S100A4P26447 101 aaKnown RBP2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 S100A11P31949 105 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 CD200P41217 278 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 RTL8BQ17RB0 113 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 PRSS54Q6PEW0 395 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 HRCT1Q6UXD1 115 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 IDO2Q6ZQW0 420 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 KTN1-AS1Q86SY8 53 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 IFT20Q8IY31 132 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 ZNF101Q8IZC7 436 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 TCTE3Q8IZS6 198 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 MIR7-3HGQ8N6C7 128 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 TMEM203Q969S6 136 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 HIST1H2BAQ96A08 127 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 ZNF586Q9NXT0 402 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 SNX12Q9UMY4 172 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 FUT9Q9Y231 359 aa2.52□□□□□ -2.01
HMGB1P38-201ENST00000490557 MED23Q9ULK4 1368 aa2.51□□□□□ -2.01
HMGB1P38-201ENST00000490557 ZCCHC11Q5TAX3 1644 aaKnown RBP2.51□□□□□ -2.01
HMGB1P38-201ENST00000490557 A0A096LPI6 279 aa2.51□□□□□ -2.01
HMGB1P38-201ENST00000490557 TRDV1A0A1B0GX56 115 aa2.51□□□□□ -2.01
HMGB1P38-201ENST00000490557 C9JAW5 83 aa2.51□□□□□ -2.01
HMGB1P38-201ENST00000490557 TNFSF15O95150 251 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms