RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CUX1P39880 1505 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ABCC2Q92887 1545 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 NKTRP30414 1462 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 ATP7BP35670 1465 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DISP2A7MBM2 1401 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CASKIN1Q8WXD9 1431 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 NSD3Q9BZ95 1437 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ROBO3Q96MS0 1386 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PTPRJQ12913 1337 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ZNF532Q9HCE3 1301 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 IGHV2-26A0A0B4J1V2 119 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 IGSF23A1L1A6 192 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 F5H5T6 163 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 F5H768 121 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 H0Y980 276 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 I3L521 148 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 KPNA3O00505 521 aaPredicted RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 TCF21O43680 179 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CHP2O43745 196 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 HPGDSO60760 199 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SH2D1AO60880 128 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ATG12O94817 140 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CNIH1O95406 144 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MPC2O95563 127 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 FADS2O95864 444 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 IFNA1P01562 189 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SHBGP04278 402 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PRB1P04280 392 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 APODP05090 189 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CRYBA1P05813 215 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C8GP07360 202 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 METTL15P1P0C7V9 234 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR12D1P0DN82 309 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CD79AP11912 226 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 COX4I1P13073 169 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 BRS3P32247 399 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MAGEA3P43357 314 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GCLMP48507 274 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DNASE1L1P49184 302 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CEBPGP53567 150 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RAB38P57729 211 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RPS20P60866 119 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 RPL26P61254 145 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 PKIAP61925 76 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PSG4Q00888 419 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RUNX1Q01196 453 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 EMX1Q04741 257 aaPredicted RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 SRSF6Q13247 344 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 FLOT2Q14254 428 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SURF2Q15527 256 aaPredicted RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 VAMP3Q15836 100 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CEACAM21Q3KPI0 293 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 TMEM176BQ3YBM2 270 aaPredicted RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 SLC36A2Q495M3 483 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ACSM3Q53FZ2 586 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 AKIRIN2Q53H80 203 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OCIAD2Q56VL3 154 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PCOTHQ58A44 107 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RNASE10Q5GAN6 216 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 CLLU1Q5K131 121 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C10orf91Q5T1B1 145 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SPATA31B1PQ5VZV4 182 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 DCUN1D2Q6PH85 259 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ALKAL1Q6UXT8 129 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 Q6ZRU5 148 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 Q6ZT83 130 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 CLEC20AQ6ZU45 233 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ZNF767PQ75MW2 155 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 COMMD7Q86VX2 200 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 C10orf107Q8IVU9 208 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 BAP18Q8IXM2 172 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 BLIDQ8IZY5 108 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR6V1Q8N148 313 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 Q8N402 240 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 STX19Q8N4C7 294 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 MMGT1Q8N4V1 131 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SMIM20Q8N5G0 67 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 UBL4BQ8N7F7 174 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ZIC4Q8N9L1 334 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GATD1Q8NB37 220 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR8G5Q8NG78 346 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 GPR32P1Q8NGA4 272 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR4P4Q8NGL7 312 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR9Q1Q8NGQ5 310 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR4C6Q8NH72 309 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR10A6Q8NH74 314 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR5AK3PQ8NH89 298 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 OR2AE1Q8NHA4 323 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 STOML3Q8TAV4 291 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 FNDC9Q8TBE3 224 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 PIGXQ8TBF5 258 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 LGALS14Q8TCE9 139 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RNASEH2CQ8TDP1 164 aaKnown RBP0.75□□□□□ -2.29
SMC4-220ENST00000488017 HAVCR2Q8TDQ0 301 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ASB17Q8WXJ9 295 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 RORBQ92753 470 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 HIST1H2BAQ96A08 127 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 ISOC1Q96CN7 298 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 TLCD1Q96CP7 247 aa0.75□□□□□ -2.29
SMC4-220ENST00000488017 SFRP2Q96HF1 295 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms