RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 NMES1Q9C002 83 aa11.86□□□□□ -0.51
NPHP4-205ENST00000466897 MED28Q9H204 178 aa11.86□□□□□ -0.51
NPHP4-205ENST00000466897 F11RQ9Y624 299 aaKnown RBP11.86□□□□□ -0.51
NPHP4-205ENST00000466897 CEBPZOSA8MTT3 80 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 FAM25EA8MYX2 175 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 SYNGR2O43760 224 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 HTR2BP41595 481 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 H2BFSP57053 126 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 RRAS2P62070 204 aaPredicted RBP11.85□□□□□ -0.51
NPHP4-205ENST00000466897 CD83Q01151 205 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 TCTEX1D4Q5JR98 221 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 PVRIGQ6DKI7 326 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 Q6ZNX1 250 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 SPATA3Q8NHX4 192 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 CIB3Q96Q77 187 aaPredicted RBP11.85□□□□□ -0.51
NPHP4-205ENST00000466897 HIPK2Q9H2X6 1198 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 RBKSQ9H477 322 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 ZFP57Q9NU63 452 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 MGAT4CQ9UBM8 478 aa11.85□□□□□ -0.51
NPHP4-205ENST00000466897 IGLV11-55A0A075B6I3 123 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 FAM223BA6NKX1 122 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 REG1AP05451 166 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 PF4V1P10720 104 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 RAB9AP51151 201 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 SUB1P53999 127 aaKnown RBP eCLIP11.84□□□□□ -0.51
NPHP4-205ENST00000466897 KRTAP10-3P60369 221 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 SPINK9Q5DT21 86 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 TMEM65Q6PI78 240 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 C12orf54Q6X4T0 127 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 FAM223AQ8IWN6 122 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 NECAP1Q8NC96 275 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 FANCD2OSQ96PS1 177 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 P2RX4Q99571 388 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 HEYLQ9NQ87 328 aaPredicted RBP11.84□□□□□ -0.51
NPHP4-205ENST00000466897 THYN1Q9P016 225 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 GSKIPQ9P0R6 139 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 U3KQ87 197 aa11.84□□□□□ -0.51
NPHP4-205ENST00000466897 CORTO00230 105 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 NXPH3O95157 252 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 MBPP02686 304 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-205ENST00000466897 RNASE2P10153 161 aaKnown RBP11.83□□□□□ -0.52
NPHP4-205ENST00000466897 CD28P10747 220 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 DEFA4P12838 97 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 SNCAP37840 140 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 TAS2R30P59541 319 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 KIAA0141Q14154 515 aaPredicted RBP11.83□□□□□ -0.52
NPHP4-205ENST00000466897 C2orf83Q53S99 150 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 NOXA1Q86UR1 476 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 SLC24A4Q8NFF2 622 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 OR11H7Q8NGC8 314 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 USMG5Q96IX5 58 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 UBE2E2Q96LR5 201 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 RAB40CQ96S21 281 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 KLK15Q9H2R5 256 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 RCL1Q9Y2P8 373 aaKnown RBP11.83□□□□□ -0.52
NPHP4-205ENST00000466897 COL6A5A8TX70 2615 aa11.83□□□□□ -0.52
NPHP4-205ENST00000466897 TENM1Q9UKZ4 2725 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 A0A0G2JLM5 398 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 WRBO00258 174 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 TRGV3P03979 118 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 CXCL3P19876 107 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 CDX1P47902 265 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-205ENST00000466897 TPPP2P59282 170 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 POLR2GP62487 172 aaKnown RBP eCLIP11.82□□□□□ -0.52
NPHP4-205ENST00000466897 FCN2Q15485 313 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 SHISA2Q6UWI4 295 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 NDUFA11Q86Y39 141 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 C3orf56Q8N813 242 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 SMIM8Q96KF7 97 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 ZNF355PQ9NSJ1 428 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 DMRT1Q9Y5R6 373 aa11.82□□□□□ -0.52
NPHP4-205ENST00000466897 TSSC4Q9Y5U2 329 aaPredicted RBP11.82□□□□□ -0.52
NPHP4-205ENST00000466897 K7EPK0 472 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 SIX6O95475 246 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 SCGB1D2O95969 90 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 RPLP1P05386 114 aaKnown RBP11.81□□□□□ -0.52
NPHP4-205ENST00000466897 NPY1RP25929 384 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 MFAP2P55001 183 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 RPL23AP62750 156 aaKnown RBP11.81□□□□□ -0.52
NPHP4-205ENST00000466897 RPP30P78346 268 aaKnown RBP11.81□□□□□ -0.52
NPHP4-205ENST00000466897 RHOGP84095 191 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 FAM209BQ5JX69 171 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 ZNF491Q8N8L2 437 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 CITED2Q99967 270 aaPredicted RBP11.81□□□□□ -0.52
NPHP4-205ENST00000466897 MAGT1Q9H0U3 335 aa11.81□□□□□ -0.52
NPHP4-205ENST00000466897 TCRBV4S1A1TA0A5B7 111 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 SSSCA1O60232 199 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 TSC22D2O75157 780 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 PRH1P02810 166 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 GIPP09681 153 aaPredicted RBP11.8□□□□□ -0.52
NPHP4-205ENST00000466897 RUNX1Q01196 453 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 RAB32Q13637 225 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 EXOSC2Q13868 293 aaKnown RBP11.8□□□□□ -0.52
NPHP4-205ENST00000466897 C19orf35Q6ZS72 473 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 RNASEH2CQ8TDP1 164 aaKnown RBP11.8□□□□□ -0.52
NPHP4-205ENST00000466897 VN1R17PQ8TDU5 208 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 CXorf58Q96LI9 332 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 MS4A10Q96PG2 267 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 ATP6V0BQ99437 205 aa11.8□□□□□ -0.52
NPHP4-205ENST00000466897 ZNF436Q9C0F3 470 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms