RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TMEM213A2RRL7 107 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 MRASO14807 208 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 ZW10O43264 779 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 ATP8B1O43520 1251 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 ATP5G1P05496 136 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 HLA-EP13747 358 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 CD99P14209 185 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 NQO1P15559 274 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 SLC25A16P16260 332 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 BLVRBP30043 206 aaPredicted RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 HSPA9P38646 679 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 OR1E2P47887 323 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 TSPEAR-AS2P59090 65 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 HERVK_113P63121 156 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 TMEM267Q0VDI3 215 aaPredicted RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 EXOC3L4Q17RC7 722 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 TBC1D28Q2M2D7 210 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 LGALS9CQ6DKI2 356 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 CLEC6AQ6EIG7 209 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 RASL11AQ6T310 242 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 SCGB1D4Q6XE38 83 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 TCF24Q7RTU0 167 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 NATD1Q8N6N6 113 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 OR5L1Q8NGL2 311 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 SLC37A2Q8TED4 501 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 ABHD14BQ96IU4 210 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 SMR3AQ99954 134 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 DCUN1D5Q9BTE7 237 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 GNB1LQ9BYB4 327 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 MROQ9BYG7 248 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 IMP3Q9NV31 184 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.41□□□□□ -2.18
VPS41-207ENST00000439468 PUS1Q9Y606 427 aaKnown RBP eCLIP1.41□□□□□ -2.18
VPS41-207ENST00000439468 ROCK2O75116 1388 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 DYNC2H1Q8NCM8 4307 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 DSCAML1Q8TD84 2053 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 BAZ2BQ9UIF8 2168 aaKnown RBP1.41□□□□□ -2.18
VPS41-207ENST00000439468 TENM3Q9P273 2699 aa1.41□□□□□ -2.18
VPS41-207ENST00000439468 CHD5Q8TDI0 1954 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SCN8AQ9UQD0 1980 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 NUP210Q8TEM1 1887 aaPredicted RBP1.4□□□□□ -2.19
VPS41-207ENST00000439468 DNAH1Q9P2D7 4330 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 TINCRA0A1B0GVN0 87 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 MDFIC2A0A1B0GVS7 189 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 CCRL2O00421 344 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 IGHV3-30-3P0DP02 117 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 CFL1P23528 166 aaKnown RBP1.4□□□□□ -2.19
VPS41-207ENST00000439468 CRYBB3P26998 211 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 CD40LGP29965 261 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 LPAR6P43657 344 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 GABRA4P48169 554 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SERPINB10P48595 397 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 H2BFSP57053 126 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 RWDD2BP57060 319 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 FGF12P61328 243 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 ZNF117Q03924 483 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SS18Q15532 418 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 TMEM176BQ3YBM2 270 aaPredicted RBP1.4□□□□□ -2.19
VPS41-207ENST00000439468 ACSBG2Q5FVE4 666 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 PDPK2PQ6A1A2 396 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 PACRGLQ8N7B6 248 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.4□□□□□ -2.19
VPS41-207ENST00000439468 LYSTQ99698 3801 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 LLPHQ9BRT6 129 aaKnown RBP1.4□□□□□ -2.19
VPS41-207ENST00000439468 ZNF426Q9BUY5 554 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SMDT1Q9H4I9 107 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 C11orf1Q9H5F2 150 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 FAM206AQ9NX38 181 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SNX12Q9UMY4 172 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 FIS1Q9Y3D6 152 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 HDGFL3Q9Y3E1 203 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 ZGRF1Q86YA3 2104 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 TENM2Q9NT68 2774 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 PKDREJQ9NTG1 2253 aa1.4□□□□□ -2.19
VPS41-207ENST00000439468 SACSQ9NZJ4 4579 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 GOLGA6L10A6NI86 522 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 FNDC10F2Z333 226 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 STK16O75716 305 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 IGLV3-27P01718 113 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 OR10J1P30954 320 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 AKR1C2P52895 323 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 HPCAP84074 193 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 SRSF6Q13247 344 aaKnown RBP1.39□□□□□ -2.19
VPS41-207ENST00000439468 LCN8Q6JVE9 175 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 C2orf91Q6ZV80 131 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 C1orf174Q8IYL3 243 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 Q8NDZ9 215 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 OR52E4Q8NGH9 312 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 C16orf78Q8WTQ4 265 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 TLCD1Q96CP7 247 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 TBX5Q99593 518 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 MGLLQ99685 303 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 NSRP1Q9H0G5 558 aaKnown RBP1.39□□□□□ -2.19
VPS41-207ENST00000439468 MS4A6AQ9H2W1 248 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 PARVAQ9NVD7 372 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 TP53TG1Q9Y2A0 90 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 ALG5Q9Y673 324 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 CMYA5Q8N3K9 4069 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 ARHGAP32A7KAX9 2087 aa1.39□□□□□ -2.19
VPS41-207ENST00000439468 TNRC6AQ8NDV7 1962 aaKnown RBP1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms