RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MCTS1Q9ULC4 181 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 LOXHD1Q8IVV2 1947 aa3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 ZCCHC11Q5TAX3 1644 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-206ENST00000430086 ERCC6Q03468 1493 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 NEO1Q92859 1461 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 A0A0B4J2C4 111 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 J3KT08 172 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 CST8O60676 142 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 GZMHP20718 246 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 CRYBB3P26998 211 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 AKR1C3P42330 323 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 TAS2R30P59541 319 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 RPS28P62857 69 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 BIKQ13323 160 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 LTC4SQ16873 150 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 SMIM21Q3B7S5 101 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 AADACL3Q5VUY0 350 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 SLC25A34Q6PIV7 304 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 AGTRAPQ6RW13 159 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 TMEM86AQ8N2M4 240 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 H1FXQ92522 213 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 COPZ2Q9P299 210 aa3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 AMMECR1Q9Y4X0 333 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-206ENST00000430086 DICER1Q9UPY3 1922 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-206ENST00000430086 TRIP11Q15643 1979 aa3.09□□□□□ -1.92
CCDC88A-206ENST00000430086 CEP152O94986 1710 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 KIF26AQ9ULI4 1882 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 C7orf66A4D0T2 115 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 C17orf51A8MQB3 221 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 UBFD1O14562 309 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 LECT2O14960 151 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 CYB5BO43169 146 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 C1QAP02745 245 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 BPGMP07738 259 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF286BP0CG31 522 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 COX4I1P13073 169 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 CRHBPP24387 322 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 CD200P41217 278 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 CKS1BP61024 79 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 LGALS9BQ3B8N2 356 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 LGALSLQ3ZCW2 172 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 SPANXN3Q5MJ09 141 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 LGALS9CQ6DKI2 356 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF322Q6U7Q0 402 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 TRAPPC6BQ86SZ2 158 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 IFT20Q8IY31 132 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 EXOC3-AS1Q8N2X6 119 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 C10orf126Q8N4M7 172 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 PACRGLQ8N7B6 248 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 ST20-AS1Q8NBB2 130 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 OR5A1Q8NGJ0 315 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 ADAT3Q96EY9 351 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 CGREF1Q99674 301 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 RTL8AQ9BWD3 113 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 C11orf1Q9H5F2 150 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 TUBA4BQ9H853 241 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 SLC39A9Q9NUM3 307 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 OR5V1Q9UGF6 321 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF835Q9Y2P0 537 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 NUBP2Q9Y5Y2 271 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 U3KQK5 164 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 PLXNB3Q9ULL4 1909 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 BAZ1BQ9UIG0 1483 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 SVILO95425 2214 aa3.08□□□□□ -1.92
CCDC88A-206ENST00000430086 A0A1B0GX51 115 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 IRGMA1A4Y4 181 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 TXNDC9O14530 226 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 CDS2O95674 445 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 IGHV1-69P01742 117 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 MUC1P15941 1255 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 GPX2P18283 190 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 YPEL3P61236 119 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 RPS11P62280 158 aaKnown RBP eCLIP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 ZNF616Q08AN1 781 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 BCL2L15Q5TBC7 163 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 C16orf47Q6ZP98 133 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 LCA10Q71F78 164 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 SPATA12Q7Z6I5 190 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 KTN1-AS1Q86SY8 53 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 RNF182Q8N6D2 247 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 DNAJC9Q8WXX5 260 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 RNASE6Q93091 150 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 DERL1Q9BUN8 251 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 PCTPQ9UKL6 214 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 PTPRJQ12913 1337 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 RPRD2Q5VT52 1461 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 DOCK5Q9H7D0 1870 aa3.07□□□□□ -1.92
CCDC88A-206ENST00000430086 TRAV41A0A0B4J266 112 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 TMEM189A5PLL7 270 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 GGT3PA6NGU5 568 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 FABP5P3A8MUU1 101 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 H3BQ85 93 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 NPYP01303 97 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 IGKV1-5P01602 117 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 IGHV3-53P01767 116 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 COL1A2P08123 1366 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 SDC4P31431 198 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 LPAR6P43657 344 aa3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 RBM11P57052 281 aaKnown RBP3.06□□□□□ -1.92
CCDC88A-206ENST00000430086 MEF2BQ02080 365 aaPredicted RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms