RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 HSPE1P61604 102 aaKnown RBP7.17□□□□□ -1.26
VPS53-203ENST00000401468 PRCDQ00LT1 54 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 IL15RAQ13261 267 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SMCO1Q147U7 214 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 TNXAQ16473 311 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 BEAN1Q3B7T3 259 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 TCTEX1D4Q5JR98 221 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 C10orf55Q5SWW7 151 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 C18orf65Q6ZTR6 163 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 HSD17B13Q7Z5P4 300 aaPredicted RBP7.17□□□□□ -1.26
VPS53-203ENST00000401468 OR4D5Q8NGN0 318 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 OR1L8Q8NGR8 309 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 MYOZ3Q8TDC0 251 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 CLCC1Q96S66 551 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SPIN2AQ99865 258 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SPIN2BQ9BPZ2 258 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 QTRT1Q9BXR0 403 aaKnown RBP7.17□□□□□ -1.26
VPS53-203ENST00000401468 GON7Q9BXV9 100 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.17□□□□□ -1.26
VPS53-203ENST00000401468 CACNG5Q9UF02 275 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 EPPK1P58107 5090 aaKnown RBP7.16□□□□□ -1.26
VPS53-203ENST00000401468 MSGN1A6NI15 193 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 H3BUA1 57 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 ST8SIA3O43173 380 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 SOX15O60248 233 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 ACTL6BO94805 426 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OPN1MWP04001 364 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 TRAPPC2P0DI81 140 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 TRAPPC2BP0DI82 140 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OPN1MW2P0DN77 364 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OPN1MW3P0DN78 364 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 MYOD1P15172 320 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 CTRB1P17538 263 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 PSMB8P28062 276 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 TMEM267Q0VDI3 215 aaPredicted RBP7.16□□□□□ -1.26
VPS53-203ENST00000401468 BSXQ3C1V8 233 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 PVRIGQ6DKI7 326 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 CTRB2Q6GPI1 263 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 TTC9CQ8N5M4 171 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 ZNF114Q8NC26 417 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OR5AU1Q8NGC0 362 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OR4A16Q8NH70 328 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 NOL4LQ96MY1 436 aaPredicted RBP7.16□□□□□ -1.26
VPS53-203ENST00000401468 COMMD5Q9GZQ3 224 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 PARP11Q9NR21 331 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 NSG2Q9Y328 171 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 OR51B2Q9Y5P1 312 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 ALG5Q9Y673 324 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 DNAH3Q8TD57 4116 aa7.16□□□□□ -1.26
VPS53-203ENST00000401468 TRBV9A0A0B4J1U6 114 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 TRAV41A0A0B4J266 112 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 G3V318 75 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 CNIH1O95406 144 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 IFNA21P01568 189 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 HOXB5P09067 269 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 SPCS3P61009 180 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 GNB1P62873 340 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 WT1-ASQ06250 92 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 TNFRSF9Q07011 255 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 FOXE3Q13461 319 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 KRTAP19-4Q3LI73 84 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 LCE4AQ5TA78 99 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 Q6ZNX1 250 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 LCNL1Q6ZST4 164 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 ZNF329Q86UD4 541 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 MRPL41Q8IXM3 137 aaKnown RBP7.15□□□□□ -1.26
VPS53-203ENST00000401468 COMMD1Q8N668 190 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 LFNGQ8NES3 379 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 OR5M8Q8NGP6 311 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 GRPEL2Q8TAA5 225 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 OR10C1Q96KK4 312 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 DUX3Q96PT4 197 aa7.15□□□□□ -1.26
VPS53-203ENST00000401468 FYTTD1Q96QD9 318 aaKnown RBP7.15□□□□□ -1.26
VPS53-203ENST00000401468 FAM103A1Q9BTL3 118 aaKnown RBP7.15□□□□□ -1.26
VPS53-203ENST00000401468 A0A1W2PN81 502 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 TCRBV4S1A1TA0A5B7 111 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 PSMB11A5LHX3 300 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 ELANEP08246 267 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 PSMB6P28072 239 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 CHRNA7P36544 502 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 H2BFSP57053 126 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 KIAA0141Q14154 515 aaPredicted RBP7.14□□□□□ -1.27
VPS53-203ENST00000401468 CENPVQ7Z7K6 275 aaPredicted RBP7.14□□□□□ -1.27
VPS53-203ENST00000401468 OR2C3Q8N628 320 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 ZBTB8BQ8NAP8 495 aaPredicted RBP7.14□□□□□ -1.27
VPS53-203ENST00000401468 OR10W1Q8NGF6 305 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 RNASE11Q8TAA1 199 aaKnown RBP7.14□□□□□ -1.27
VPS53-203ENST00000401468 C2orf50Q96LR7 162 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 NMES1Q9C002 83 aa7.14□□□□□ -1.27
VPS53-203ENST00000401468 HMX3A6NHT5 357 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 CCSO14618 274 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 LY86O95711 162 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 PF4V1P10720 104 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 AREGP15514 252 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 HOXD3P31249 432 aaPredicted RBP7.13□□□□□ -1.27
VPS53-203ENST00000401468 ATP5IP56385 69 aaPredicted RBP7.13□□□□□ -1.27
VPS53-203ENST00000401468 SLC35B1P78383 322 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 CD83Q01151 205 aa7.13□□□□□ -1.27
VPS53-203ENST00000401468 IAH1Q2TAA2 248 aaPredicted RBP7.13□□□□□ -1.27
VPS53-203ENST00000401468 CXorf66Q5JRM2 361 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms