RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PPIAL4GP0DN37 164 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 TIMM23BQ5SRD1 257 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 OR4A47Q6IF82 309 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 HSPB8Q9UJY1 196 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 CLDN16Q9Y5I7 305 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 FNDC1Q4ZHG4 1894 aaPredicted RBP10.66□□□□□ -0.7
USP53-209ENST00000514665 TSC2P49815 1807 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 SCO2A0A1W2PP80 73 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 ICAM4Q14773 271 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 SRSF12Q8WXF0 261 aaKnown RBP10.66□□□□□ -0.7
USP53-209ENST00000514665 CYTL1Q9NRR1 136 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 DMRT1Q9Y5R6 373 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 ZNF146Q15072 292 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 SPANXN1Q5VSR9 72 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 FAM131CQ96AQ9 280 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 SDF2L1Q9HCN8 221 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 GSN-AS1Q9NRJ2 163 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 TCF21O43680 179 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 RPL7P18124 248 aaKnown RBP10.66□□□□□ -0.7
USP53-209ENST00000514665 COL5A1-AS1Q5SY13 56 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 S4R3C0 116 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 LINC00587B1AMM8 73 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 C1QTNF9BB2RNN3 333 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 PRB3Q04118 309 aaPredicted RBP10.65□□□□□ -0.7
USP53-209ENST00000514665 SPATA45Q537H7 98 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 TMEM97Q5BJF2 176 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 GOLT1AQ6ZVE7 132 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 GGNQ86UU5 652 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 REG4Q9BYZ8 158 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 IGHV3OR16-13A0A075B7E8 117 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 IGHV3-74A0A0B4J1X5 117 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 PGPEP1LA6NFU8 196 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 LEPROTL1O95214 131 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 MGPP08493 103 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 SCGB1D4Q6XE38 83 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 TMEM183AQ8IXX5 376 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 MRPL37Q9BZE1 423 aaKnown RBP10.65□□□□□ -0.7
USP53-209ENST00000514665 ZSWIM8A7E2V4 1837 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 TRPM7Q96QT4 1865 aa10.65□□□□□ -0.7
USP53-209ENST00000514665 TMEM189A5PLL7 270 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 VENTXO95231 258 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 NAPSAO96009 420 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 NMUP48645 174 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 PNKDQ8N490 385 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 OR5R1Q8NH85 324 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 SFXN3Q9BWM7 321 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 PLXNA3P51805 1871 aa10.65□□□□□ -0.71
USP53-209ENST00000514665 MAS1LP35410 378 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 C21orf62-AS1Q17RA5 79 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 HELZP42694 1942 aaKnown RBP10.64□□□□□ -0.71
USP53-209ENST00000514665 FBLL1A6NHQ2 334 aaKnown RBP10.64□□□□□ -0.71
USP53-209ENST00000514665 CCL3L1P16619 93 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 RPL23P62829 140 aaKnown RBP10.64□□□□□ -0.71
USP53-209ENST00000514665 OR4D5Q8NGN0 318 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 LINC01560Q8TB33 94 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 TMEM186Q96B77 213 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 SLC25A33Q9BSK2 321 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 VSIRQ9H7M9 311 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 PNRC2Q9NPJ4 139 aaKnown RBP10.64□□□□□ -0.71
USP53-209ENST00000514665 ZNF883P0CG24 379 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 TWIST1Q15672 202 aa10.64□□□□□ -0.71
USP53-209ENST00000514665 IGHV1-69-2A0A0G2JMI3 117 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 A0A1B0GV90 55 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 IQCF6A8MYZ5 107 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 NDUFA2O43678 99 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 GCSAMLQ5JQS6 135 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 ZNF524Q96C55 264 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 RNF115Q9Y4L5 304 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 CKS2P33552 79 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 UNQ5815/PRO19632Q6UWF5 114 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 LINC00305Q7Z4B0 112 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 DPF1Q92782 380 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 KBTBD11-OT1A0A1B0GTJ5 212 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 HOXA5P20719 270 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 BMI1P35226 326 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 WDR82Q6UXN9 313 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 MIR17HGQ75NE6 70 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 OR4B1Q8NGF8 309 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 IFI27L2Q9H2X8 130 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 FBXL15Q9H469 300 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 MRPS18CQ9Y3D5 142 aaKnown RBP10.63□□□□□ -0.71
USP53-209ENST00000514665 C1QTNF9P0C862 333 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 ZNF841Q6ZN19 808 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 TMEM171Q8WVE6 324 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 PLXND1Q9Y4D7 1925 aa10.63□□□□□ -0.71
USP53-209ENST00000514665 NTN3O00634 580 aaPredicted RBP10.62□□□□□ -0.71
USP53-209ENST00000514665 IL4P05112 153 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 CD5P06127 495 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 NBEAP1P0C6P0 100 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 CA7P43166 264 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 TFPI2P48307 235 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 QRFPP83859 136 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 ZNF497Q6ZNH5 498 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 LRTM2Q8N967 370 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 CLEC7AQ9BXN2 247 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 TUBA4BQ9H853 241 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 ARFGEF3Q5TH69 2177 aa10.62□□□□□ -0.71
USP53-209ENST00000514665 KIR2DL2P43627 348 aaPredicted RBP10.62□□□□□ -0.71
USP53-209ENST00000514665 ZNF324BQ6AW86 544 aaPredicted RBP10.62□□□□□ -0.71
USP53-209ENST00000514665 DGAT2L7PQ6IED9 249 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms