RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 ZNF2Q9BSG1 426 aaPredicted RBP8.72□□□□□ -1.01
VTI1A-208ENST00000494728 QTRT1Q9BXR0 403 aaKnown RBP8.72□□□□□ -1.01
VTI1A-208ENST00000494728 PLEKHA2Q9HB19 425 aa8.72□□□□□ -1.01
VTI1A-208ENST00000494728 IFT46Q9NQC8 304 aa8.72□□□□□ -1.01
VTI1A-208ENST00000494728 SLC2A8Q9NY64 477 aa8.72□□□□□ -1.01
VTI1A-208ENST00000494728 COMMD9Q9P000 198 aa8.72□□□□□ -1.01
VTI1A-208ENST00000494728 NSG2Q9Y328 171 aa8.72□□□□□ -1.01
VTI1A-208ENST00000494728 IGHV3-21A0A0B4J1V1 117 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 TEX50A0A1B0GTY4 177 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 ZNF320A2RRD8 509 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 PGLYRP1O75594 196 aaPredicted RBP8.71□□□□□ -1.02
VTI1A-208ENST00000494728 DEFA4P12838 97 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 HIST1H1BP16401 226 aaKnown RBP8.71□□□□□ -1.02
VTI1A-208ENST00000494728 CBX5P45973 191 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 NCS1P62166 190 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 DHRS11Q6UWP2 260 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 LYSMD2Q8IV50 215 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 GDPD1Q8N9F7 314 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 DMBX1Q8NFW5 382 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 S100A16Q96FQ6 103 aaKnown RBP8.71□□□□□ -1.02
VTI1A-208ENST00000494728 COMMD5Q9GZQ3 224 aa8.71□□□□□ -1.02
VTI1A-208ENST00000494728 TECRQ9NZ01 308 aaKnown RBP8.71□□□□□ -1.02
VTI1A-208ENST00000494728 TRBV7-1A0A0A6YYK4 115 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 TGOLN2O43493 480 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 DHFRP00374 187 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 C8orf88P0DMB2 117 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 OR13C7P0DN81 318 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 F2RP25116 425 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 HLA-DMAP28067 261 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 HRH1P35367 487 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 G6PCP35575 357 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 LPAR6P43657 344 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 ZNF57Q68EA5 555 aaPredicted RBP8.7□□□□□ -1.02
VTI1A-208ENST00000494728 TSPAN14Q8NG11 270 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 OR5H2Q8NGV7 314 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 SLC25A46Q96AG3 418 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 CHRDL1Q9BU40 450 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 NDUFA4L2Q9NRX3 87 aa8.7□□□□□ -1.02
VTI1A-208ENST00000494728 IGHV3OR16-8A0A075B7F1 116 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 OR2T8A6NH00 312 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 TMEM127O75204 238 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 KRASP01116 189 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 IGKV1-39P01597 117 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 IGKV1D-39P04432 117 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 SERPINE2P07093 398 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 PTBP1P26599 531 aaKnown RBP eCLIP8.69□□□□□ -1.02
VTI1A-208ENST00000494728 ADMP35318 185 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 PHLDA2Q53GA4 152 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 CD300LFQ8TDQ1 290 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 GPX8Q8TED1 209 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 TMEM190Q8WZ59 177 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 DGCR14Q96DF8 476 aaKnown RBP8.69□□□□□ -1.02
VTI1A-208ENST00000494728 CXorf58Q96LI9 332 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 SRSF8Q9BRL6 282 aaKnown RBP8.69□□□□□ -1.02
VTI1A-208ENST00000494728 HINT2Q9BX68 163 aa8.69□□□□□ -1.02
VTI1A-208ENST00000494728 ZNF436Q9C0F3 470 aaPredicted RBP8.69□□□□□ -1.02
VTI1A-208ENST00000494728 F11RQ9Y624 299 aaKnown RBP8.69□□□□□ -1.02
VTI1A-208ENST00000494728 K7EIM0 57 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 IFNA6P05013 189 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 FGF2P09038 288 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 TRAPPC2P0DI81 140 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 TRAPPC2BP0DI82 140 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 ELK1P19419 428 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 PRSS3P35030 304 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 TAS2R46P59540 309 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 VBP1P61758 197 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 FAM106AQ4KMX7 169 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 PLET1Q6UQ28 207 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 SNX29P2Q8IUI4 249 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 CROCCP3Q8IVE0 287 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 OR52B4Q8NGK2 314 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 OR1L8Q8NGR8 309 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 AIFM2Q9BRQ8 373 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 FUNDC2Q9BWH2 189 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 NAA50Q9GZZ1 169 aaKnown RBP8.68□□□□□ -1.02
VTI1A-208ENST00000494728 COMMD3Q9UBI1 195 aa8.68□□□□□ -1.02
VTI1A-208ENST00000494728 A0A087WXM4 84 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 C15orf61A6NNL5 157 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 GPR31O00270 319 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 ZNF207O43670 478 aaKnown RBP8.67□□□□□ -1.02
VTI1A-208ENST00000494728 HPGDSO60760 199 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 TNFAIP8O95379 198 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 ERVK-16P61578 105 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 EWSR1Q01844 656 aaKnown RBP eCLIP8.67□□□□□ -1.02
VTI1A-208ENST00000494728 IZUMO4Q1ZYL8 232 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 ODF3L2Q3SX64 289 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 RNASE12Q5GAN4 147 aaKnown RBP8.67□□□□□ -1.02
VTI1A-208ENST00000494728 SLC16A13Q7RTY0 426 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 VN1R17PQ8TDU5 208 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 SCARB1Q8WTV0 552 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 LSM10Q969L4 123 aaKnown RBP8.67□□□□□ -1.02
VTI1A-208ENST00000494728 TMEM14BQ9NUH8 114 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 UBQLN2Q9UHD9 624 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 OR51B2Q9Y5P1 312 aa8.67□□□□□ -1.02
VTI1A-208ENST00000494728 DNAH10Q8IVF4 4471 aa8.66□□□□□ -1.02
VTI1A-208ENST00000494728 VPS13DQ5THJ4 4388 aa8.66□□□□□ -1.02
VTI1A-208ENST00000494728 M0QYG6 137 aa8.66□□□□□ -1.02
VTI1A-208ENST00000494728 APOA1P02647 267 aa8.66□□□□□ -1.02
VTI1A-208ENST00000494728 SMIM18P0DKX4 95 aa8.66□□□□□ -1.02
VTI1A-208ENST00000494728 THOC7Q6I9Y2 204 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms