RNA–Protein interactions for RNA: ENST00000480127.1

COL17A1-205, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 3

Gene COL17A1, Length 420 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-205ENST00000480127 FAM25GB3EWG6 89 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 TEX22C9J3V5 150 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 LGALS9O00182 355 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 RBFOX2O43251 390 aaKnown RBP eCLIP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 SCGB2A1O75556 95 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 SERPINE2P07093 398 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 HLA-DMAP28067 261 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 BMI1P35226 326 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 RFX2P48378 723 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 APOC4P55056 127 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 OR2B8PP59922 312 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 RPL11P62913 178 aaKnown RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PMS2P11Q13670 270 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PHLDA2Q53GA4 152 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 TM4SF20Q53R12 229 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 RNASE12Q5GAN4 147 aaKnown RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 THOC7Q6I9Y2 204 aaKnown RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 LPCAT3Q6P1A2 487 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 H2BFWTQ7Z2G1 175 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 GPHB5Q86YW7 130 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 SNX29P2Q8IUI4 249 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 TMEM61Q8N0U2 210 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PUSL1Q8N0Z8 303 aaKnown RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 CENPSQ8N2Z9 138 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 LSM10Q969L4 123 aaKnown RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 MARC2Q969Z3 335 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 MISP3Q96FF7 219 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 TSC22D3Q99576 134 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 THAP7Q9BT49 309 aaPredicted RBP5.35□□□□□ -1.55
COL17A1-205ENST00000480127 GGTLC1Q9BX51 225 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 HIPK2Q9H2X6 1198 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PLEKHA2Q9HB19 425 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 ENY2Q9NPA8 101 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 FKBP11Q9NYL4 201 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 COMMD9Q9P000 198 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 COMMD3Q9UBI1 195 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PRNDQ9UKY0 176 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 OR51B2Q9Y5P1 312 aa5.35□□□□□ -1.55
COL17A1-205ENST00000480127 PLECQ15149 4684 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 IGKV3-7A0A075B6H7 116 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 IGHV3OR16-8A0A075B7F1 116 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 A0A087WXM4 84 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 RBMY1BA6NDE4 496 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 RBMY1EA6NEQ0 496 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 OR4C46A6NHA9 309 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 GPR31O00270 319 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 UPK2O00526 184 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 NUPL2O15504 423 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TGOLN2O43493 480 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 XRCC3O43542 346 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 ZNF207O43670 478 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TMEM127O75204 238 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TNFAIP8O95379 198 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 RBMY1DP0C7P1 496 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 ZNF735P0CB33 412 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 CTRB1P17538 263 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 F2RP25116 425 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 HRH1P35367 487 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 G6PCP35575 357 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 SNCAP37840 140 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 LPAR6P43657 344 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TFPI2P48307 235 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 AKR1C2P52895 323 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TAS2R20P59543 309 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 RELQ04864 619 aaPredicted RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 MSMO1Q15800 293 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 KCTD21Q4G0X4 260 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 CTRB2Q6GPI1 263 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 SPSB3Q6PJ21 355 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 IL34Q6ZMJ4 242 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 LINC00322Q6ZN03 302 aaPredicted RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 STPG3Q8N7X2 389 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 GDPD1Q8N9F7 314 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 OR10W1Q8NGF6 305 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 LINC00476Q8WZB0 136 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 PINX1Q96BK5 328 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 SLC25A38Q96DW6 304 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 CCDC140Q96MF4 163 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 SRSF8Q9BRL6 282 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 DAZ1Q9NQZ3 744 aaKnown RBP5.34□□□□□ -1.55
COL17A1-205ENST00000480127 C21orf62Q9NYP8 219 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 UBQLN2Q9UHD9 624 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 NSG2Q9Y328 171 aa5.34□□□□□ -1.55
COL17A1-205ENST00000480127 TRAV3A0A0B4J244 114 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 ZNF785A8K8V0 405 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 DNASE2O00115 360 aaPredicted RBP5.33□□□□□ -1.56
COL17A1-205ENST00000480127 ATG12O94817 140 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 CRYGCP07315 174 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 RPL35AP18077 110 aaKnown RBP5.33□□□□□ -1.56
COL17A1-205ENST00000480127 PTBP1P26599 531 aaKnown RBP eCLIP5.33□□□□□ -1.56
COL17A1-205ENST00000480127 PAFAH1B2P68402 229 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 ERHP84090 104 aaKnown RBP5.33□□□□□ -1.56
COL17A1-205ENST00000480127 MRGPRG-AS1Q2M3A8 158 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 TRIM16LQ309B1 348 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 MZT2AQ6P582 158 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 OR2C3Q8N628 320 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 TMEM217Q8N7C4 229 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 SLC35G3Q8N808 338 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 VN1R17PQ8TDU5 208 aa5.33□□□□□ -1.56
COL17A1-205ENST00000480127 GIMAP1Q8WWP7 306 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms