RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SNCAP37840 140 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 TMEM177Q53S58 311 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 C11orf42Q8N5U0 333 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 ST6GALNAC6Q969X2 333 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 GGACTQ9BVM4 153 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 PATZ1Q9HBE1 687 aaKnown RBP13.7□□□□□ -0.22
LDLR-206ENST00000557958 OR51B2Q9Y5P1 312 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 TRAV3A0A0B4J244 114 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 C15orf62A8K5M9 175 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 RNASEK-C17orf49H0YIS7 233 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 UPK2O00526 184 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 VDAC2P45880 294 aaPredicted RBP13.7□□□□□ -0.22
LDLR-206ENST00000557958 EFNA4P52798 201 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 AKR1C1Q04828 323 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 PEA15Q15121 130 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 BEND2Q8NDZ0 799 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 OR4A5Q8NH83 315 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 NABP2Q9BQ15 211 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 UTP20O75691 2785 aaKnown RBP13.69□□□□□ -0.22
LDLR-206ENST00000557958 PMS2P5A8MQ11 134 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 GPR6P46095 362 aaPredicted RBP13.69□□□□□ -0.22
LDLR-206ENST00000557958 SRSF3P84103 164 aaKnown RBP13.69□□□□□ -0.22
LDLR-206ENST00000557958 VWC2Q2TAL6 325 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 ZNF709Q8N972 641 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 LY6G5BQ8NDX9 201 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 OR5B3Q8NH48 314 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 RSG1Q9BU20 258 aa13.69□□□□□ -0.22
LDLR-206ENST00000557958 SSBP3Q9BWW4 388 aaPredicted RBP13.69□□□□□ -0.22
LDLR-206ENST00000557958 C17orf112F2Z3M2 114 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 KBTBD11O94819 623 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 IL6RP08887 468 aaPredicted RBP13.68□□□□□ -0.22
LDLR-206ENST00000557958 SAA1P0DJI8 122 aaPredicted RBP13.68□□□□□ -0.22
LDLR-206ENST00000557958 REG1BP48304 166 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 HLA-DRB5Q30154 266 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 HIST2H2BCQ6DN03 193 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 PLEKHA3Q9HB20 300 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 ONECUT1Q9UBC0 465 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 DCHS2Q6V1P9 2916 aa13.68□□□□□ -0.22
LDLR-206ENST00000557958 SOX15O60248 233 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 MBP02144 154 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 CD5P06127 495 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 USF1P22415 310 aaPredicted RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 ATP5IP56385 69 aaPredicted RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 TMEM88Q6PEY1 159 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 CBLN2Q8IUK8 224 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 RBMXL1Q96E39 390 aaKnown RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 EIF5A2Q9GZV4 153 aaKnown RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 SMDT1Q9H4I9 107 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 MLXQ9UH92 298 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 LOC105371242A0A075B767 164 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 OVOL3O00110 214 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 IGLV1-47P01700 117 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 FGF7P21781 194 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 PAX6P26367 422 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 NPBWR1P48145 328 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 RPS16P62249 146 aaKnown RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 PRCDQ00LT1 54 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 GUK1Q16774 197 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 TMEM41BQ5BJD5 291 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 ETV3LQ6ZN32 361 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 CENPVQ7Z7K6 275 aaPredicted RBP13.67□□□□□ -0.22
LDLR-206ENST00000557958 SLC24A4Q8NFF2 622 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 TMEM231Q9H6L2 316 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 FAM96BQ9Y3D0 163 aa13.67□□□□□ -0.22
LDLR-206ENST00000557958 A0A1B0GW64 132 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 M0R1W7 72 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 MPDU1O75352 247 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 IFNA4P05014 189 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 NPY1RP25929 384 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 CD1BP29016 333 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 LGALS7P47929 136 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 VMA21Q3ZAQ7 101 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 ZNF787Q6DD87 383 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 COMMD5Q9GZQ3 224 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 KIAA1456Q9P272 454 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 RFNGQ9Y644 331 aa13.66□□□□□ -0.22
LDLR-206ENST00000557958 TRAV1-1A0A0B4J248 108 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 SRRM4A7MD48 611 aaKnown RBP13.65□□□□□ -0.22
LDLR-206ENST00000557958 IGHV4-39P01824 125 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 RPL8P62917 257 aaKnown RBP13.65□□□□□ -0.22
LDLR-206ENST00000557958 DLK1P80370 383 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 SFT2D1Q8WV19 159 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 HINT2Q9BX68 163 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 SAV1Q9H4B6 383 aaPredicted RBP13.65□□□□□ -0.22
LDLR-206ENST00000557958 BUB1B-PAK6H3BSN5 160 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 SFTA3P0C7M3 94 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 RPEQ96AT9 228 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 PERPQ96FX8 193 aa13.65□□□□□ -0.22
LDLR-206ENST00000557958 C22orf46C9J442 243 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 ATP5J2P56134 94 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 OR1L8Q8NGR8 309 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 TMEM167AQ8TBQ9 72 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 NPCDR1Q9BY65 106 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 KCNIP2Q9NS61 270 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 INSIG2Q9Y5U4 225 aa13.64□□□□□ -0.23
LDLR-206ENST00000557958 FAM157AC9JC47 383 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 COX7A1P24310 79 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 KRTAP10-9P60411 292 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 DIAPH2-AS1Q14236 149 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 BIN3Q9NQY0 253 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms