RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-211	ENST00000546304	TSPAN9	O75954	239 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	HPRT1	P00492	218 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	HRAS	P01112	189 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	SERPINE2	P07093	398 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	HNRNPC	P07910	306 aa	Known RBP eCLIP	5	□□□□□ -1.61
PRKDC-211	ENST00000546304	OR5AC1	P0C628	307 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	NQO2	P16083	231 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	MDK	P21741	143 aa	Predicted RBP	5	□□□□□ -1.61
PRKDC-211	ENST00000546304	SLC6A1	P30531	599 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	VDAC2	P45880	294 aa	Predicted RBP	5	□□□□□ -1.61
PRKDC-211	ENST00000546304	LGALS7	P47929	136 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	TAS2R31	P59538	309 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	DEFA1	P59665	94 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	DEFA3	P59666	94 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	ERVK-16	P61578	105 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	BLCAP	P62952	87 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	NDP	Q00604	133 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	IFITM3	Q01628	133 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	POU2AF1	Q16633	256 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	C9orf152	Q5JTZ5	239 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	VKORC1L1	Q8N0U8	176 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304		Q8N2B8	174 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	VSTM2A	Q8TAG5	236 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	ENKUR	Q8TC29	256 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	R3HDM4	Q96D70	268 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	TP53RK	Q96S44	253 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	RASL11B	Q9BPW5	248 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	HSPB9	Q9BQS6	159 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	RTBDN	Q9BSG5	229 aa	Predicted RBP	5	□□□□□ -1.61
PRKDC-211	ENST00000546304	C20orf85	Q9H1P6	137 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	FAM212B	Q9NTI7	297 aa	Predicted RBP	5	□□□□□ -1.61
PRKDC-211	ENST00000546304	NUDT15	Q9NV35	164 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	SIGLEC9	Q9Y336	463 aa		5	□□□□□ -1.61
PRKDC-211	ENST00000546304	IGHV7-81	A0A0B4J1V7	117 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304		A0A1B0GUS0	222 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	FAM240B	A0A1B0GVZ2	78 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	TMEM89	A2RUT3	159 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	AP4M1	O00189	453 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ARPC1B	O15143	372 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ATP6V0E1	O15342	81 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	KBTBD11	O94819	623 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	CA2	P00918	260 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	IGHG2	P01859	326 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	HLA-A	P01891	365 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	CRYGB	P07316	175 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	RPA2	P15927	270 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	AKR1C4	P17516	323 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	UCP1	P25874	307 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	AKR1C2	P52895	323 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	UBE2M	P61081	183 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SUPT4H1	P63272	117 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SRPX	P78539	464 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SSBP2	P81877	361 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	FHL2	Q14192	279 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	TRIM16L	Q309B1	348 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	KRTAP21-3	Q3LHN1	58 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ZNF585B	Q52M93	769 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	AWAT1	Q58HT5	328 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	TMEM128	Q5BJH2	165 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	C19orf54	Q5BKX5	351 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	OR4A47	Q6IF82	309 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SSX9	Q7RTT3	188 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SLC35E3	Q7Z769	313 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	PPP1R27	Q86WC6	154 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	FOXRED2	Q8IWF2	684 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SGPP2	Q8IWX5	399 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	PUSL1	Q8N0Z8	303 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	KLHDC1	Q8N7A1	406 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	CLRN3	Q8NCR9	226 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ADAD2	Q8NCV1	583 aa	Known RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	DMBX1	Q8NFW5	382 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	LINC01006	Q8NI28	216 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	GRPEL2	Q8TAA5	225 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ARPC1A	Q92747	370 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	GALNT14	Q96FL9	552 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	AIFM2	Q9BRQ8	373 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	TMEM222	Q9H0R3	208 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	C16orf95	Q9H693	158 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	ZNF430	Q9H8G1	570 aa	Predicted RBP	4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	BEX1	Q9HBH7	125 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	PALMD	Q9NP74	551 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	PARP11	Q9NR21	331 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	SERTAD4	Q9NUC0	356 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	TMEM140	Q9NV12	185 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	BET1L	Q9NYM9	111 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	FLVCR2	Q9UPI3	526 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	MMP24	Q9Y5R2	645 aa		4.99	□□□□□ -1.61
PRKDC-211	ENST00000546304	CMYA5	Q8N3K9	4069 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	TRAV6	A0A075B6T7	132 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	CLPSL1	A2RUU4	121 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	ACTL6B	O94805	426 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	OR2A4	O95047	310 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	KRAS	P01116	189 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	IGKV1-39	P01597	117 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	IGKV1D-39	P04432	117 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	TCRB	P04435	133 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	ANXA3	P12429	323 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	GYPE	P15421	78 aa		4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	ANXA7	P20073	488 aa	Known RBP	4.98	□□□□□ -1.61
PRKDC-211	ENST00000546304	G6PC	P35575	357 aa		4.98	□□□□□ -1.61

Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms