RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 OR2B8PP59922 312 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 MZT2AQ6P582 158 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 IL34Q6ZMJ4 242 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 OR6F1Q8NGZ6 308 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 GPX8Q8TED1 209 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 AP3S1Q92572 193 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 SIGLEC8Q9NYZ4 499 aa10.15□□□□□ -0.78
VPS28-211ENST00000530790 MARCH11A6NNE9 402 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 FAM25AB3EWG3 89 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 FAM25CB3EWG5 89 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 FAM25GB3EWG6 89 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 PPP5D1E7EU14 171 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 GPR31O00270 319 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 UPK2O00526 184 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 HPGDSO60760 199 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 PGLYRP1O75594 196 aaPredicted RBP10.14□□□□□ -0.79
VPS28-211ENST00000530790 CSN3P07498 182 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 FGF2P09038 288 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 CTRB1P17538 263 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 F2RP25116 425 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 S100GP29377 79 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 TSPAN5P62079 268 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 CTRB2Q6GPI1 263 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 SGPP2Q8IWX5 399 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 Q8N402 240 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 EEF1AKMT3Q96AZ1 226 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 QTRT1Q9BXR0 403 aaKnown RBP10.14□□□□□ -0.79
VPS28-211ENST00000530790 NAA50Q9GZZ1 169 aaKnown RBP10.14□□□□□ -0.79
VPS28-211ENST00000530790 TNCP24821 2201 aa10.14□□□□□ -0.79
VPS28-211ENST00000530790 TRAV3A0A0B4J244 114 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 CGB1A6NKQ9 187 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 GGCTO75223 188 aaKnown RBP10.13□□□□□ -0.79
VPS28-211ENST00000530790 IGHV3-23P01764 117 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 IGHV4-30-4P0DP06 118 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 RPA2P15927 270 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 ARL3P36405 182 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 CTF1Q16619 201 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 THOC7Q6I9Y2 204 aaKnown RBP10.13□□□□□ -0.79
VPS28-211ENST00000530790 GTSCR1Q86UQ5 136 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 LYSMD2Q8IV50 215 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 SBSPONQ8IVN8 264 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 DYNLRB2Q8TF09 96 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 DGCR14Q96DF8 476 aaKnown RBP10.13□□□□□ -0.79
VPS28-211ENST00000530790 CCDC140Q96MF4 163 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 FANCD2OSQ96PS1 177 aa10.13□□□□□ -0.79
VPS28-211ENST00000530790 SRSF8Q9BRL6 282 aaKnown RBP10.13□□□□□ -0.79
VPS28-211ENST00000530790 IGLV11-55A0A075B6I3 123 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 IGLC7A0M8Q6 106 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 CYB5BO43169 146 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 NDUFB8O95169 186 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 LPAR6P43657 344 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 PHLDA2Q53GA4 152 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 GPR107Q5VW38 600 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 LPCAT3Q6P1A2 487 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 CLEC19AQ6UXS0 136 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 OR2K2Q8NGT1 345 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 FCAMRQ8WWV6 532 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 CXorf58Q96LI9 332 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 MRPS26Q9BYN8 205 aaKnown RBP10.12□□□□□ -0.79
VPS28-211ENST00000530790 S4R3C0 116 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 SORL1Q92673 2214 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 TENM3Q9P273 2699 aa10.12□□□□□ -0.79
VPS28-211ENST00000530790 TRBV7-1A0A0A6YYK4 115 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 MFSD2BA6NFX1 497 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 KRASP01116 189 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 HLA-AP01891 365 aaKnown RBP10.11□□□□□ -0.79
VPS28-211ENST00000530790 ZNF182P17025 639 aaPredicted RBP10.11□□□□□ -0.79
VPS28-211ENST00000530790 G6PCP35575 357 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 KLK9Q2XQG4 91 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 RNASE12Q5GAN4 147 aaKnown RBP10.11□□□□□ -0.79
VPS28-211ENST00000530790 HSD17B13Q7Z5P4 300 aaPredicted RBP10.11□□□□□ -0.79
VPS28-211ENST00000530790 GPR141Q7Z602 305 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 SLC38A6Q8IZM9 456 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 Q8N1Y9 231 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 RCHY1Q96PM5 261 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 ZMAT4Q9H898 229 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 THYN1Q9P016 225 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 EXTL2Q9UBQ6 330 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 KLK9Q9UKQ9 250 aa10.11□□□□□ -0.79
VPS28-211ENST00000530790 A8MZ25 164 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 LGALS9O00182 355 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 SNAPC5O75971 98 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 OR2C1O95371 312 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 TRAPPC2P0DI81 140 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 TRAPPC2BP0DI82 140 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 TBC1D26Q86UD7 250 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 GDPD1Q8N9F7 314 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 OR10W1Q8NGF6 305 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 OR1L8Q8NGR8 309 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 LSM10Q969L4 123 aaKnown RBP10.1□□□□□ -0.79
VPS28-211ENST00000530790 HINT2Q9BX68 163 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 DMRT1Q9Y5R6 373 aa10.1□□□□□ -0.79
VPS28-211ENST00000530790 STAB2Q8WWQ8 2551 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 IZUMO1RA6ND01 250 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 C2orf70A6NJV1 201 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 M0QYG6 137 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 IFNA6P05013 189 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 OR13C7P0DN81 318 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 GPR183P32249 361 aa10.09□□□□□ -0.79
VPS28-211ENST00000530790 UCP3P55916 312 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms