RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 FAM96BQ9Y3D0 163 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 SLC25A17O43808 307 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 DFFBO76075 338 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 VENTXO95231 258 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 TMEM50AO95807 157 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 IGLV2-23P01705 113 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 SAA4P35542 130 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 RAB14P61106 215 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 RAB11AP62491 216 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 ERHP84090 104 aaKnown RBP12.87□□□□□ -0.35
NUP54-214ENST00000514307 EBI3Q14213 229 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 HES1Q14469 280 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 LDLRAD2Q5SZI1 272 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 BAP18Q8IXM2 172 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 TEX29Q8N6K0 151 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 CFHR4Q92496 578 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 PHYHIPLQ96FC7 376 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 CRYBG3Q68DQ2 2970 aa12.87□□□□□ -0.35
NUP54-214ENST00000514307 A0A1W2PN81 502 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 IGSF23A1L1A6 192 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 IFNA10P01566 189 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 IGKV1D-33P01593 117 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 IGKV1-33P01594 117 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 CHRNA7P36544 502 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 HOXA1P49639 335 aaPredicted RBP12.86□□□□□ -0.35
NUP54-214ENST00000514307 ZNF266Q14584 549 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 PLGLAQ15195 96 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 PPP1R27Q86WC6 154 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 NPBQ8NG41 125 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 EAF1Q96JC9 268 aaPredicted RBP12.86□□□□□ -0.35
NUP54-214ENST00000514307 RITA1Q96K30 269 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 HINT2Q9BX68 163 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 PLEKHA3Q9HB20 300 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 METTL1Q9UBP6 276 aaKnown RBP12.86□□□□□ -0.35
NUP54-214ENST00000514307 UBQLN2Q9UHD9 624 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 SIGLEC9Q9Y336 463 aa12.86□□□□□ -0.35
NUP54-214ENST00000514307 DOCK11Q5JSL3 2073 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 RRHO14718 337 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 CST7O76096 145 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 IFNA5P01569 189 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 CRYGBP07316 175 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 SNCAP37840 140 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 VDAC2P45880 294 aaPredicted RBP12.85□□□□□ -0.35
NUP54-214ENST00000514307 SUB1P53999 127 aaKnown RBP eCLIP12.85□□□□□ -0.35
NUP54-214ENST00000514307 PRCDQ00LT1 54 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 HNF4GQ14541 408 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 PRSS8Q16651 343 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 TMEM249Q2WGJ8 235 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 TMEM14EPQ6UXP3 125 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 UBAC2Q8NBM4 344 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 OR10P1Q8NGE3 313 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 STOML3Q8TAV4 291 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 ST8SIA2Q92186 375 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 PINX1Q96BK5 328 aaKnown RBP12.85□□□□□ -0.35
NUP54-214ENST00000514307 MEGF9Q9H1U4 602 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 CYTL1Q9NRR1 136 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 FBXL17Q9UF56 701 aa12.85□□□□□ -0.35
NUP54-214ENST00000514307 CENPEQ02224 2701 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 INS-IGF2F8WCM5 200 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 NBR2O15453 112 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 IGHV4-31P0DP07 118 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 HTR2BP41595 481 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 DYNLT3P51808 116 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 HSD17B13Q7Z5P4 300 aaPredicted RBP12.84□□□□□ -0.35
NUP54-214ENST00000514307 OR5C1Q8NGR4 320 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 SMIM3Q9BZL3 60 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 ZNF430Q9H8G1 570 aaPredicted RBP12.84□□□□□ -0.35
NUP54-214ENST00000514307 NDUFA4L2Q9NRX3 87 aa12.84□□□□□ -0.35
NUP54-214ENST00000514307 DCHS2Q6V1P9 2916 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 H3BP45 60 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 TSPAN9O75954 239 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 OR8U8P0C7N1 319 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 METTL15P1P0C7V9 234 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 TMEM11P17152 192 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 COMPP49747 757 aaPredicted RBP12.83□□□□□ -0.36
NUP54-214ENST00000514307 MMDQ15546 238 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 NDUFA5Q16718 116 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 DYNAPQ8N1N2 210 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 STPG2Q8N412 459 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 TMEM217Q8N7C4 229 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 LRRC20Q8TCA0 184 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 SCGB1C1Q8TD33 95 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 SCARB1Q8WTV0 552 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 ZDHHC16Q969W1 377 aa12.83□□□□□ -0.36
NUP54-214ENST00000514307 SRSF8Q9BRL6 282 aaKnown RBP12.83□□□□□ -0.36
NUP54-214ENST00000514307 NCBP2LA6PVI3 153 aaKnown RBP12.82□□□□□ -0.36
NUP54-214ENST00000514307 CNIH1O95406 144 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 FBP1P09467 338 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 SPINK9Q5DT21 86 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 RPL7L1Q6DKI1 246 aaKnown RBP12.82□□□□□ -0.36
NUP54-214ENST00000514307 SLC25A24Q6NUK1 477 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 CLEC9AQ6UXN8 241 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 NANPQ8TBE9 248 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 GNPNAT1Q96EK6 184 aaPredicted RBP12.82□□□□□ -0.36
NUP54-214ENST00000514307 AJUBAQ96IF1 538 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 ATP5SQ99766 215 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 GGACTQ9BVM4 153 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 ARID1AO14497 2285 aa12.82□□□□□ -0.36
NUP54-214ENST00000514307 AKAP6Q13023 2319 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms