RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 LRRC75AQ8NAA5 344 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 ZNF680Q8NEM1 530 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 ANGPTL6Q8NI99 470 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 HIST1H2BAQ96A08 127 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 CRIM1Q9NZV1 1036 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TRIP12Q14669 1992 aaPredicted RBP3.57□□□□□ -1.84
VCAN-209ENST00000513016 KNTC1P50748 2209 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 MSGN1A6NI15 193 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TMEM14DPA8MWL7 114 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TMEM178BH3BS89 294 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 NUDT3O95989 172 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 LINC00271P0C7V0 271 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 KLK2P20151 261 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 RHOGP84095 191 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 FAM201AQ5SY85 155 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 SIGIRRQ6IA17 410 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TMEM91Q6ZNR0 172 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 RAB24Q969Q5 203 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 SPSB4Q96A44 273 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 SGK494Q96LW2 274 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 NABP2Q9BQ15 211 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 PLSCR2Q9NRY7 297 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 ZFP30Q9Y2G7 519 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 PINLYPA6NC86 204 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 RRHO14718 337 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 RNF224P0DH78 156 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 ATP6V0CP27449 155 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 EMP1P54849 157 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 RND3P61587 244 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TPTE2P1Q5T6R2 138 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 OR11H4Q8NGC9 324 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TMEM70Q9BUB7 260 aa3.57□□□□□ -1.84
VCAN-209ENST00000513016 TDRD15B5MCY1 1934 aaKnown RBP3.57□□□□□ -1.84
VCAN-209ENST00000513016 A0A1B0GUS0 222 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 TMEM238LA0A1B0GVL6 79 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 A6NJY4 79 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 C9JCJ5 164 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 H3BRM9 83 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 KLF4O43474 513 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 PAX8Q06710 450 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CLLU1Q5K131 121 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 KLF2Q9Y5W3 355 aaPredicted RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 PARP14Q460N5 1801 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 FOXI3A8MTJ6 420 aaPredicted RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 H3BUX3 64 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 UPK2O00526 184 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 ZNHIT1O43257 154 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 RAMP1O60894 148 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 TDGF1P13385 188 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CCL3L1P16619 93 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 ELOBQ15370 118 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 NUDT10Q8NFP7 164 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 GTF3AQ92664 365 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 PQLC2LA1A4F0 135 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 EFNB2P52799 333 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 LINC01590Q5TEZ4 76 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 IL36RNQ9UBH0 155 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 SHROOM3Q8TF72 1996 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 LYNX1G3V0Z9 82 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 PSCAO43653 123 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CA2P00918 260 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 LYNX1P0DP58 116 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CDX1P47902 265 aaPredicted RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 SUMO2P61956 95 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 FOXF2Q12947 444 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 LCN12Q6JVE5 192 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 HAPLN4Q86UW8 402 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CLRN3Q8NCR9 226 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 OR9G4Q8NGQ1 327 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 H0YL77 283 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 TGFBR3LH3BV60 316 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 ZNF688P0C7X2 276 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 LGALS3P17931 250 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 BTF3P20290 206 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 NMUP48645 174 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CR1LQ2VPA4 569 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 RPL39P5Q59GN2 51 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 ZNF362Q5T0B9 420 aaPredicted RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 MIC13Q5XKP0 118 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 MRPL54Q6P161 138 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 WDR82Q6UXN9 313 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 SRSF12Q8WXF0 261 aaKnown RBP3.56□□□□□ -1.84
VCAN-209ENST00000513016 LOC285556D6RIA3 1793 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 A0A0G2JK05 382 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 PLAUP00749 431 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CELA3BP08861 270 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 PKIAP61925 76 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 C2orf83Q53S99 150 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 FAM74A4Q5TZK3 123 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 CADM3Q8N126 398 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 C11orf44Q8N8P7 122 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 FLVCR1-AS1Q8TAF5 88 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 ASCL2Q99929 193 aa3.56□□□□□ -1.84
VCAN-209ENST00000513016 IGKV3OR2-268A0A0C4DH90 116 aa3.55□□□□□ -1.84
VCAN-209ENST00000513016 RBFOX2O43251 390 aaKnown RBP eCLIP3.55□□□□□ -1.84
VCAN-209ENST00000513016 ZNF207O43670 478 aaKnown RBP3.55□□□□□ -1.84
VCAN-209ENST00000513016 PSPNO60542 156 aa3.55□□□□□ -1.84
VCAN-209ENST00000513016 AMY1AP04745 511 aa3.55□□□□□ -1.84
VCAN-209ENST00000513016 PRSS53Q2L4Q9 553 aa3.55□□□□□ -1.84
VCAN-209ENST00000513016 IBA57Q5T440 356 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms