RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TMEM218A2RU14 115 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 C9orf170A2RU37 121 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 F8VP50 259 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 GNGT2O14610 69 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 PDCD5O14737 125 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 PLA2G10O15496 165 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 LYRM1O43325 122 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 TPST1O60507 370 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 FADS2O95864 444 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 SERPINA1P01009 418 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 OPN1SWP03999 348 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 NMBP08949 121 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SULT1A3P0DMM9 295 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SULT1A4P0DMN0 295 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 CTLA4P16410 223 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 GADD45AP24522 165 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 PSMA1P25786 263 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 LCN1P31025 176 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 RPL35P42766 123 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 MAP2K4P45985 399 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 AKR1D1P51857 326 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 RAB5BP61020 215 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 LSM3P62310 102 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 DEFA6Q01524 100 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 COTL1Q14019 142 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SMCO1Q147U7 214 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 TAF1AQ15573 450 aaPredicted RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 ACTBL2Q562R1 376 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SPIN4Q56A73 249 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 FBXO48Q5FWF7 155 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 C10orf91Q5T1B1 145 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 TRIQKQ629K1 86 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 RPL13AP3Q6NVV1 102 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 ALKAL1Q6UXT8 129 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 RASSF6Q6ZTQ3 369 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 MRPL52Q86TS9 123 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 PDZD9Q8IXQ8 264 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SPICQ8N5J4 248 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 ZNF675Q8TD23 568 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 ACOT12Q8WYK0 555 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 TCEAL4Q96EI5 215 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 CPB2Q96IY4 423 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 MCEEQ96PE7 176 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 C2orf88Q9BSF0 95 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 COPS4Q9BT78 406 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 BBS2Q9BXC9 721 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 BEX2Q9BXY8 128 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 NKX6-2Q9C056 277 aaPredicted RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 METTL9Q9H1A3 318 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 OR2D2Q9H210 308 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 OR51V1Q9H2C8 321 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 OR5V1Q9UGF6 321 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SCML1Q9UN30 329 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 SSR3Q9UNL2 185 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 KCPQ6ZWJ8 1503 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 MICAL3Q7RTP6 2002 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 BAZ2BQ9UIF8 2168 aaKnown RBP2.05□□□□□ -2.08
USP48-209ENST00000487880 LOC285095A0A1B0GVY8 99 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 IRGMA1A4Y4 181 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 ARRDC5A6NEK1 342 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 NAP1L6A6NFF2 107 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 RGPD3A6NKT7 1758 aaPredicted RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 TMEM210A6NLX4 147 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 C5orf58C9J3I9 102 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 NDUFS8O00217 210 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 AZIN1O14977 448 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 ATG12O94817 140 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 MPC2O95563 127 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 TSPAN19P0C672 248 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 LINC00614P0C842 121 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 UBBP0CG47 229 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 SLC35E2BP0CK96 405 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 CBR1P16152 277 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 PVALBP20472 110 aaPredicted RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 MIPP30301 263 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 S100A11P31949 105 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 ACTR1BP42025 376 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 INPP1P49441 399 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 EVX1P49640 407 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 RBP2P50120 134 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 C1QTNF8P60827 252 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 SNRPD2P62316 118 aaKnown RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 UBA52P62987 128 aaKnown RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 DYNLL1P63167 89 aaKnown RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 SKP1P63208 163 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 MLLT11Q13015 90 aaPredicted RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 C1DQ13901 141 aaKnown RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 TSNQ15631 228 aaKnown RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 PYCR3Q53H96 274 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 SAPCD1Q5SSQ6 148 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 HAGHLQ6PII5 290 aaPredicted RBP2.04□□□□□ -2.08
USP48-209ENST00000487880 AHSA2Q719I0 299 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 RGPD4Q7Z3J3 1758 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 TAC4Q86UU9 113 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 NRAPQ86VF7 1730 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 ANGPTL5Q86XS5 388 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 Q8N402 240 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 TMEM161BQ8NDZ6 487 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 MALSU1Q96EH3 234 aa2.04□□□□□ -2.08
USP48-209ENST00000487880 MRPS24Q96EL2 167 aaKnown RBP2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms