RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CDRT1O95170 752 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 HTR1AP08908 422 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 GABRB1P18505 474 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 PTBP1P26599 531 aaKnown RBP eCLIP5.6□□□□□ -1.51
USP54-211ENST00000474929 EMP1P54849 157 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 RELQ04864 619 aaPredicted RBP5.6□□□□□ -1.51
USP54-211ENST00000474929 TMED1Q13445 227 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 SSX1Q16384 188 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 SMN1Q16637 294 aaKnown RBP5.6□□□□□ -1.51
USP54-211ENST00000474929 CEACAM19Q7Z692 300 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 TMEM116Q8NCL8 245 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 DUSP18Q8NEJ0 188 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 VSTM2AQ8TAG5 236 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 MRPL30Q8TCC3 161 aaKnown RBP5.6□□□□□ -1.51
USP54-211ENST00000474929 VN1R17PQ8TDU5 208 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 NTN5Q8WTR8 489 aaPredicted RBP5.6□□□□□ -1.51
USP54-211ENST00000474929 PTX4Q96A99 478 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 GRAMD2BQ96HH9 432 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 ADTRPQ96IZ2 230 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 Q96MT0 163 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 FANCD2OSQ96PS1 177 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 OR14A2Q96R54 314 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 KRTAP1-5Q9BYS1 174 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 ZNF430Q9H8G1 570 aaPredicted RBP5.6□□□□□ -1.51
USP54-211ENST00000474929 CLEC5AQ9NY25 188 aa5.6□□□□□ -1.51
USP54-211ENST00000474929 FAT3Q8TDW7 4589 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 IGKV3-7A0A075B6H7 116 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 IGLV11-55A0A075B6I3 123 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 J3QRE1 110 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 RPA2P15927 270 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 MAS1LP35410 378 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 RPL27AP46776 148 aaKnown RBP5.59□□□□□ -1.51
USP54-211ENST00000474929 PPP3R1P63098 170 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 Q6ZRN7 208 aaPredicted RBP5.59□□□□□ -1.51
USP54-211ENST00000474929 DHRSXQ8N5I4 330 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 ACBD7Q8N6N7 88 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 OR51A4Q8NGJ6 313 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 GGHQ92820 318 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 TMEM231Q9H6L2 316 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 ISG20L2Q9H9L3 353 aaKnown RBP5.59□□□□□ -1.51
USP54-211ENST00000474929 FRRS1LQ9P0K9 344 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 EXOGQ9Y2C4 368 aaKnown RBP5.59□□□□□ -1.51
USP54-211ENST00000474929 S4R3C0 116 aa5.59□□□□□ -1.51
USP54-211ENST00000474929 ZNF705FA8MVS1 300 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 TEX22C9J3V5 150 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 E9PI62 339 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 PDCD6O75340 191 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 WBP4O75554 376 aaKnown RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 CD2P06729 351 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 ZNF705DP0CH99 300 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 ZNF705BP0CI00 300 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 ZNF93P35789 620 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 HOXA1P49639 335 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 PSMD7P51665 324 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 NANOS3P60323 173 aaKnown RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 HAMPP81172 84 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 KCTD21Q4G0X4 260 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 UBE2UQ5VVX9 321 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 TTC23Q5W5X9 447 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 FAM90A2PQ658T7 463 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 ZNF705AQ6ZN79 300 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 IDO2Q6ZQW0 420 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 TCF24Q7RTU0 167 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 GBGT1Q8N5D6 347 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 OR52I1Q8NGK6 324 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 APH1BQ8WW43 257 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 RNF125Q96EQ8 232 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 MRPL48Q96GC5 212 aaKnown RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 C4orf36Q96KX1 117 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 SRSF8Q9BRL6 282 aaKnown RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 GINS3Q9BRX5 216 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 C11orf54Q9H0W9 315 aaPredicted RBP5.58□□□□□ -1.52
USP54-211ENST00000474929 TMEM138Q9NPI0 162 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 ZNF586Q9NXT0 402 aa5.58□□□□□ -1.52
USP54-211ENST00000474929 A0A087WTM6 91 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 IGLV5-52A0A0A0MRZ9 124 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 UBE2QL1A1L167 161 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 HMX3A6NHT5 357 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 TMEM212A6NML5 194 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 ZNF735P0CB33 412 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 SAA1P0DJI8 122 aaPredicted RBP5.57□□□□□ -1.52
USP54-211ENST00000474929 CEACAM6P40199 344 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 SOX2P48431 317 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 TMEM69Q5SWH9 247 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 C10orf55Q5SWW7 151 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 OGFRL1Q5TC84 451 aaPredicted RBP5.57□□□□□ -1.52
USP54-211ENST00000474929 DDI2Q5TDH0 399 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 MFSD4AQ8N468 514 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 SVOPQ8N4V2 548 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 PACRGLQ8N7B6 248 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 DGCR14Q96DF8 476 aaKnown RBP5.57□□□□□ -1.52
USP54-211ENST00000474929 OR10C1Q96KK4 312 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 MS4A6AQ9H2W1 248 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 ERVK13-1Q9NX77 482 aa5.57□□□□□ -1.52
USP54-211ENST00000474929 TRAV14DV4A0A0A6YYC5 116 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 OR2T8A6NH00 312 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 OR4C45A6NMZ5 311 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 SRRM4A7MD48 611 aaKnown RBP5.56□□□□□ -1.52
USP54-211ENST00000474929 PROP1O75360 226 aa5.56□□□□□ -1.52
USP54-211ENST00000474929 GAS8-AS1O95177 125 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms