RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DEFA4P12838 97 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 CTRB1P17538 263 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 GNRHRP30968 328 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 PRSS3P35030 304 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 TAS2R46P59540 309 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 VBP1P61758 197 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 CTRB2Q6GPI1 263 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 GTSCR1Q86UQ5 136 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 DMBX1Q8NFW5 382 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 DYNLRB2Q8TF09 96 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 MOB3AQ96BX8 217 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 FUNDC2Q9BWH2 189 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 FXYD6Q9H0Q3 95 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 TMEM140Q9NV12 185 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 COMMD3Q9UBI1 195 aa11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 DYNC2H1Q8NCM8 4307 aaKnown RBP11.93□□□□□ -0.5
CCDC88B-205ENST00000472524 UPK2O00526 184 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 GGCTO75223 188 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 LYL1P12980 280 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 EDN2P20800 178 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 OR2B8PP59922 312 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 POU2AF1Q16633 256 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 FAM209BQ5JX69 171 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 CLEC19AQ6UXS0 136 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 CD300LFQ8TDQ1 290 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 BORCS5Q969J3 196 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 EEF1AKMT3Q96AZ1 226 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 KCTD12Q96CX2 325 aaKnown RBP11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 CCDC140Q96MF4 163 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 PLEKHA2Q9HB19 425 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 C19orf73Q9NVV2 129 aa11.92□□□□□ -0.5
CCDC88B-205ENST00000472524 OR2C1O95371 312 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 HIST1H1BP16401 226 aaKnown RBP11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 NAT1P18440 290 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 HLA-DMAP28067 261 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 HRH1P35367 487 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 ARL3P36405 182 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 ERVK-16P61578 105 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 CD300EQ496F6 205 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 DHRS11Q6UWP2 260 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 ADAMTSL5Q6ZMM2 481 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 THAP7Q9BT49 309 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 COMMD5Q9GZQ3 224 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 COMMD9Q9P000 198 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 DMRT1Q9Y5R6 373 aa11.91□□□□□ -0.5
CCDC88B-205ENST00000472524 IGLV11-55A0A075B6I3 123 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 SMIM31A0A1B0GVY4 71 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 IGLC7A0M8Q6 106 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 MFSD2BA6NFX1 497 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 C2orf70A6NJV1 201 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 A8MZ25 164 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 PGLYRP1O75594 196 aaPredicted RBP11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 MECP2P51608 486 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 ZFAND6Q6FIF0 208 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 OR2K2Q8NGT1 345 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 OR6F1Q8NGZ6 308 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 TM2D3Q9BRN9 247 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 TUBA4BQ9H853 241 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 PALMDQ9NP74 551 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 ZC4H2Q9NQZ6 224 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 SELENOKQ9Y6D0 94 aa11.9□□□□□ -0.5
CCDC88B-205ENST00000472524 EPPK1P58107 5090 aaKnown RBP11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 LCE6AA0A183 80 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 MARCH11A6NNE9 402 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 HPGDSO60760 199 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 APOA1P02647 267 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 FOLR2P14207 255 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 F2RP25116 425 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 LPAR6P43657 344 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 CD81P60033 236 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 PHLDA2Q53GA4 152 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 LYSMD2Q8IV50 215 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 CMTM1Q8IZ96 169 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 OR10W1Q8NGF6 305 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 GPX8Q8TED1 209 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 CACNG8Q8WXS5 425 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 CITED4Q96RK1 184 aa11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 QTRT1Q9BXR0 403 aaKnown RBP11.89□□□□□ -0.51
CCDC88B-205ENST00000472524 ZNF320A2RRD8 509 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 GPR31O00270 319 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 TSPAN5P62079 268 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 KLK9Q2XQG4 91 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 DEFB114Q30KQ6 69 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 FCAMRQ8WWV6 532 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 DGCR14Q96DF8 476 aaKnown RBP11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 CXorf58Q96LI9 332 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 HINT2Q9BX68 163 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 PLEKHA3Q9HB20 300 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 KLK9Q9UKQ9 250 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 NSG2Q9Y328 171 aa11.88□□□□□ -0.51
CCDC88B-205ENST00000472524 TRBV7-1A0A0A6YYK4 115 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 TEX50A0A1B0GTY4 177 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 LGALS9O00182 355 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 KRASP01116 189 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 TRAPPC2P0DI81 140 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 TRAPPC2BP0DI82 140 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 ELK1P19419 428 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 GPR183P32249 361 aa11.87□□□□□ -0.51
CCDC88B-205ENST00000472524 G6PCP35575 357 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms