RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CHD8Q9HCK8 2581 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 UPK2O00526 184 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 LOXL3P58215 753 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 UBE2G2P60604 165 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 C10orf113Q5VZT2 155 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 PPP1R27Q86WC6 154 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 LDLRAD3Q86YD5 345 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 ZNF843Q8N446 348 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 RNF5Q99942 180 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 PCNX3Q9H6A9 2034 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 DNASE2O00115 360 aaPredicted RBP6.82□□□□□ -1.32
PTPRD-204ENST00000397606 CFDP00746 253 aaPredicted RBP6.82□□□□□ -1.32
PTPRD-204ENST00000397606 WNT2P09544 360 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 CNN1P51911 297 aaKnown RBP6.82□□□□□ -1.32
PTPRD-204ENST00000397606 RND2P52198 227 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 UBE2L3P68036 154 aaKnown RBP6.82□□□□□ -1.32
PTPRD-204ENST00000397606 CLLU1Q5K131 121 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 FAM71F2Q6NXP2 309 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 SLC25A33Q9BSK2 321 aa6.82□□□□□ -1.32
PTPRD-204ENST00000397606 TRANK1O15050 2925 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 ZNF727A8MUV8 499 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 NPFFO15130 113 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 MT-ND4LP03901 98 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 ATP6V0CP27449 155 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 ATP5G2Q06055 141 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 PJVKQ0ZLH3 352 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 ADIRFQ15847 76 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 KIAA2026Q5HYC2 2103 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 BTF3L4Q96K17 158 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 ZNF430Q9H8G1 570 aaPredicted RBP6.81□□□□□ -1.32
PTPRD-204ENST00000397606 MED13LQ71F56 2210 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 FAM90A9PA6NNJ1 464 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 HYPMO75409 117 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 SPP1P10451 314 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 OR10J1P30954 320 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 FLI1Q01543 452 aaPredicted RBP6.81□□□□□ -1.32
PTPRD-204ENST00000397606 LRRC75BQ2VPJ9 315 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 LRTM2Q8N967 370 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 IGHV1-3A0A0C4DH29 117 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 BUB1B-PAK6H3BSN5 160 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 REG1AP05451 166 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 LOXP28300 417 aaPredicted RBP6.81□□□□□ -1.32
PTPRD-204ENST00000397606 KLRD1Q13241 179 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 SLC16A13Q7RTY0 426 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 C11orf53Q8IXP5 236 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 Q96MF0 132 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 BIN3Q9NQY0 253 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 HKR1P10072 659 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 TMEM41BQ5BJD5 291 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 EEF1AKMT3Q96AZ1 226 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 RPUSD4Q96CM3 377 aaKnown RBP6.81□□□□□ -1.32
PTPRD-204ENST00000397606 C18orf12Q96KH6 178 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 PRSS22Q9GZN4 317 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 TOLLIPQ9H0E2 274 aa6.81□□□□□ -1.32
PTPRD-204ENST00000397606 A0A0G2JLM5 398 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 RAMP3O60896 148 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 C16orf82Q7Z2V1 217 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 SMIM15Q7Z3B0 74 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 DTX2Q86UW9 622 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 MS4A10Q96PG2 267 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 IGHV2-70DA0A0C4DH43 119 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 C15orf61A6NNL5 157 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 C1QL1O75973 258 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 RD3LP0DJH9 198 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 DLK1P80370 383 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 SSX3Q99909 188 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 SMIM7Q9BQ49 75 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 MMP26Q9NRE1 261 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 HIGD1AQ9Y241 93 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 MALRD1Q5VYJ5 2156 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 MSGN1A6NI15 193 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 CA2P00918 260 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 PAFAH1B2P68402 229 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 FAM106AQ4KMX7 169 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 DPPA3Q6W0C5 159 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 BEND2Q8NDZ0 799 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 SRSF12Q8WXF0 261 aaKnown RBP6.8□□□□□ -1.32
PTPRD-204ENST00000397606 TAF15Q92804 592 aaKnown RBP eCLIP6.8□□□□□ -1.32
PTPRD-204ENST00000397606 OR4C12Q96R67 309 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 BET1LQ9NYM9 111 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 PXMP4Q9Y6I8 212 aa6.8□□□□□ -1.32
PTPRD-204ENST00000397606 CTXND1A0A1B0GTU2 59 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 BMPR1BO00238 502 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 RRHO14718 337 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 IGHV2-70P01814 119 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 TRGV3P03979 118 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 LINC00869P0C866 280 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 M6PRP20645 277 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 CD24P25063 80 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 COL8A1P27658 744 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 S100A2P29034 98 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 UBE2E1P51965 193 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 TPPP2P59282 170 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 ARL16Q0P5N6 197 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 HERPUD1Q15011 391 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 GUK1Q16774 197 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 OR4P4Q8NGL7 312 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 DYNLRB2Q8TF09 96 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 CHRDL1Q9BU40 450 aa6.79□□□□□ -1.32
PTPRD-204ENST00000397606 GGACTQ9BVM4 153 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms