RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 RAB5BP61020 215 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 EIF4EBP1Q13541 118 aaPredicted RBP8.14□□□□□ -1.11
HMGB3-201ENST00000325307 ETFRF1Q6IPR1 90 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 OR4P4Q8NGL7 312 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 OR1S2Q8NGQ3 325 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CD300LFQ8TDQ1 290 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 C2CD4CQ8TF44 421 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 MALSU1Q96EH3 234 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 TBX15Q96SF7 602 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 C7orf69Q9H7B7 122 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 VPS13CQ709C8 3753 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 A0A096LNT2 108 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 KANTRA0A1W2PQU2 76 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 RNASEK-C17orf49H0YIS7 233 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CDS2O95674 445 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 EPHA1P21709 976 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 MAS1LP35410 378 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 ZNF833PQ6ZTB9 187 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 SELENOHQ8IZQ5 122 aaKnown RBP8.14□□□□□ -1.11
HMGB3-201ENST00000325307 LRTM2Q8N967 370 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 ZNF383Q8NA42 475 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 TMEM56Q96MV1 263 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 PRDM13Q9H4Q3 707 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 HILPDAQ9Y5L2 63 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 TMEM56-RWDD3S4R434 201 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 ABCA2Q9BZC7 2435 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV3OR16-10A0A075B7F0 116 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 SMAD7O15105 426 aaKnown RBP8.14□□□□□ -1.11
HMGB3-201ENST00000325307 S1PR2O95136 353 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 KRASP01116 189 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 APOA2P02652 100 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CT45A6P0DMU7 189 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CT45A5P0DMU8 189 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CT45A7P0DMV0 189 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 MMP9P14780 707 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CYCSP99999 105 aaKnown RBP8.14□□□□□ -1.11
HMGB3-201ENST00000325307 RTL8BQ17RB0 113 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 ZNF585BQ52M93 769 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 SPNS3Q6ZMD2 512 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 MOB3BQ86TA1 216 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 KRTAP1-3Q8IUG1 177 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 OR11H6Q8NGC7 330 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 C22orf15Q8WYQ4 148 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 AQP10Q96PS8 301 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 TUBA4BQ9H853 241 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 GOLT1BQ9Y3E0 138 aa8.14□□□□□ -1.11
HMGB3-201ENST00000325307 CEACAM3P40198 252 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 KIR2DS2P43631 304 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 NHLH2Q02577 135 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 PAX8Q06710 450 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 IAH1Q2TAA2 248 aaPredicted RBP8.13□□□□□ -1.11
HMGB3-201ENST00000325307 TMEM249Q2WGJ8 235 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 OR4S2Q8NH73 311 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 RBMXL1Q96E39 390 aaKnown RBP8.13□□□□□ -1.11
HMGB3-201ENST00000325307 ZNF471Q9BX82 626 aaPredicted RBP8.13□□□□□ -1.11
HMGB3-201ENST00000325307 SLC35D1Q9NTN3 355 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 DPM3Q9P2X0 92 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 RPH3ALQ9UNE2 315 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV3-72A0A0B4J1Y9 119 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 PIGBOS1A0A0B4J2F0 54 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 GAPDHP04406 335 aaKnown RBP8.13□□□□□ -1.11
HMGB3-201ENST00000325307 OR8U8P0C7N1 319 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 HCP5Q6MZN7 132 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 TCTEX1D1Q8N7M0 179 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 FOXC2Q99958 501 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 TMED3Q9Y3Q3 217 aa8.13□□□□□ -1.11
HMGB3-201ENST00000325307 DEDDO75618 318 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 HKR1P10072 659 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 G6PCP35575 357 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 IL34Q6ZMJ4 242 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 INO80EQ8NBZ0 244 aaPredicted RBP8.12□□□□□ -1.11
HMGB3-201ENST00000325307 IL22RA2Q969J5 263 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 ST6GALNAC6Q969X2 333 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 PUS1Q9Y606 427 aaKnown RBP eCLIP8.12□□□□□ -1.11
HMGB3-201ENST00000325307 SERTM2A0A1B0GWG4 89 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 TMEM238C9JI98 176 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 DLEU1O43261 78 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 VDAC1P21796 283 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 BRWD1-AS2P59051 145 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 GGACTQ9BVM4 153 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 TRAV40A0A0B4J280 105 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 IGKV1-39P01597 117 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 MBPP02686 304 aaPredicted RBP8.12□□□□□ -1.11
HMGB3-201ENST00000325307 IGKV1D-39P04432 117 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 UBE2E1P51965 193 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 ZNF137PP52743 207 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 S100A10P60903 97 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 ERVK-16P61578 105 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 SRSF3P84103 164 aaKnown RBP8.12□□□□□ -1.11
HMGB3-201ENST00000325307 IZUMO4Q1ZYL8 232 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 FAM71F2Q6NXP2 309 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 FOXRED2Q8IWF2 684 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 NABP2Q9BQ15 211 aa8.12□□□□□ -1.11
HMGB3-201ENST00000325307 RBMXL2O75526 392 aaKnown RBP8.11□□□□□ -1.11
HMGB3-201ENST00000325307 HPRT1P00492 218 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV4-31P0DP07 118 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 GATA3P23771 443 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 PEA15Q15121 130 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 TPTE2P1Q5T6R2 138 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 GPR157Q5UAW9 335 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms