RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RAB39BQ96DA2 213 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 GAL3ST2Q9H3Q3 398 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 SLC25A22Q9H936 323 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 CTSZQ9UBR2 303 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 YLPM1P49750 1951 aaKnown RBP16.6■□□□□ 0.25
CLN3-230ENST00000568076 IGF2RP11717 2491 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.6■□□□□ 0.25
CLN3-230ENST00000568076 A0A1W2PPH5 198 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 CD1BP29016 333 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 UCNP55089 124 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 FAM90A2PQ658T7 463 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 OR10G9Q8NGN4 311 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 OR10G7Q8NGN6 311 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 CA5BP1Q8WTZ4 195 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 LHX4Q969G2 390 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 DYNLRB1Q9NP97 96 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 TMEM14BQ9NUH8 114 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 FOXA2Q9Y261 457 aaPredicted RBP16.6■□□□□ 0.25
CLN3-230ENST00000568076 WDR83OSQ9Y284 106 aa16.6■□□□□ 0.25
CLN3-230ENST00000568076 PKDREJQ9NTG1 2253 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 HMGB3O15347 200 aaKnown RBP16.59■□□□□ 0.25
CLN3-230ENST00000568076 PLAUP00749 431 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 IGKV1-16P04430 117 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 CA7P43166 264 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 POU2AF1Q16633 256 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 HEPN1Q6WQI6 88 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 OR10A7Q8NGE5 316 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 LINC01560Q8TB33 94 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 ZNF714Q96N38 554 aa16.59■□□□□ 0.25
CLN3-230ENST00000568076 MYOD1P15172 320 aa16.58■□□□□ 0.25
CLN3-230ENST00000568076 GRNP28799 593 aaKnown RBP16.58■□□□□ 0.25
CLN3-230ENST00000568076 RPP30P78346 268 aaKnown RBP16.58■□□□□ 0.25
CLN3-230ENST00000568076 SRRM4A7MD48 611 aaKnown RBP16.58■□□□□ 0.24
CLN3-230ENST00000568076 MBP02144 154 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 IL6RP08887 468 aaPredicted RBP16.58■□□□□ 0.24
CLN3-230ENST00000568076 DEFA4P12838 97 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 FOLR2P14207 255 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 APOBEC3AP31941 199 aaPredicted RBP16.58■□□□□ 0.24
CLN3-230ENST00000568076 HOXA1P49639 335 aaPredicted RBP16.58■□□□□ 0.24
CLN3-230ENST00000568076 RAB11AP62491 216 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 TMPRSS5Q9H3S3 457 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 MS4A5Q9H3V2 200 aa16.58■□□□□ 0.24
CLN3-230ENST00000568076 CTXND1A0A1B0GTU2 59 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 FAM90A27PA6NNH2 459 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 DLK1P80370 383 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 PMS2P11Q13670 270 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 EFNB3Q15768 340 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 ZNF833PQ6ZTB9 187 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 ZNF709Q8N972 641 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 H1FXQ92522 213 aaKnown RBP16.57■□□□□ 0.24
CLN3-230ENST00000568076 SLC35D1Q9NTN3 355 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 VAX2Q9UIW0 290 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 POLEQ07864 2286 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 NDUFB3O43676 98 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 CD3EP07766 207 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 HSPE1P61604 102 aaKnown RBP16.57■□□□□ 0.24
CLN3-230ENST00000568076 ZFP82Q8N141 532 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 OR13D1Q8NGV5 346 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 NIPSNAP3BQ9BS92 247 aa16.57■□□□□ 0.24
CLN3-230ENST00000568076 C17orf112F2Z3M2 114 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 DVL1O14640 695 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 HRASP01112 189 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 MT-ND4LP03901 98 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 RAB13P51153 203 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 CASP6P55212 293 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 TREML4Q6UXN2 200 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 FAM24BQ8N5W8 94 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 TVP23CQ96ET8 276 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 YPEL4Q96NS1 127 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 P2RX4Q99571 388 aa16.56■□□□□ 0.24
CLN3-230ENST00000568076 SIAH2O43255 324 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 LOXP28300 417 aaPredicted RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 TAGLN2P37802 199 aaKnown RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 LRRC10Q5BKY1 277 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 RAB24Q969Q5 203 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 GGACTQ9BVM4 153 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 MRPL20Q9BYC9 149 aaKnown RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 ACTR3CQ9C0K3 210 aaPredicted RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 ZZEF1O43149 2961 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 ARFGEF3Q5TH69 2177 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 SMCO3A2RU48 225 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 ZNF727A8MUV8 499 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 B9A039 149 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 CCL21O00585 134 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 KLRB1Q12918 225 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 HABP2Q14520 560 aaPredicted RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 CDSNQ15517 529 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 FBXL19-AS1Q494R0 122 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 GCSAMLQ5JQS6 135 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 SLC35E3Q7Z769 313 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 SAV1Q9H4B6 383 aaPredicted RBP16.55■□□□□ 0.24
CLN3-230ENST00000568076 KAAG1Q9UBP8 84 aa16.55■□□□□ 0.24
CLN3-230ENST00000568076 RELNP78509 3460 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 IGHV1-69-2A0A0G2JMI3 117 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 IFNA1P01562 189 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 CD81P60033 236 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 RTL8BQ17RB0 113 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 RNF212Q495C1 297 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 ST6GALNAC3Q8NDV1 305 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 C2CD4CQ8TF44 421 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms