RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CD300EQ496F6 205 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 FAM209BQ5JX69 171 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZFAND6Q6FIF0 208 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 KCTD9Q7L273 389 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 GTSCR1Q86UQ5 136 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CROCCP3Q8IVE0 287 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 VKORC1L1Q8N0U8 176 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TMEM167AQ8TBQ9 72 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NUDCD2Q8WVJ2 157 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 KCTD12Q96CX2 325 aaKnown RBP9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 HSD17B10Q99714 261 aaKnown RBP9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SLC2A9Q9NRM0 540 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ANXA10Q9UJ72 324 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PRELID3BQ9Y3B1 194 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SMIM30A4D0T7 59 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RBMY1BA6NDE4 496 aaKnown RBP9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RBMY1EA6NEQ0 496 aaKnown RBP9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TMEM235A6NFC5 223 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 HMX3A6NHT5 357 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 C2orf70A6NJV1 201 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CGB1A6NKQ9 187 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 J3QRK9 145 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SCGNO76038 276 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 KBTBD11O94819 623 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RBMY1DP0C7P1 496 aaKnown RBP9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 EDN2P20800 178 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MAS1LP35410 378 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SCAND1P57086 179 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MSMO1Q15800 293 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SLC25A42Q86VD7 318 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 GPHB5Q86YW7 130 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MFSD4AQ8N468 514 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 OR2A7Q96R45 310 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TUBA4BQ9H853 241 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PALMDQ9NP74 551 aa9.23□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PPP5D1E7EU14 171 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MPPED1O15442 326 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 OR2J3O76001 311 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ACTL6BO94805 426 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CD7P09564 240 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 FOLR2P14207 255 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CTRB1P17538 263 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SDC2P34741 201 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CTRB2Q6GPI1 263 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SFXN4Q6P4A7 337 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZNF66Q6ZN08 573 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 C19orf35Q6ZS72 473 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 OR4S2Q8NH73 311 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 VSTM2AQ8TAG5 236 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CCDC140Q96MF4 163 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 FYTTD1Q96QD9 318 aaKnown RBP9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NEURL2Q9BR09 285 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 DCUN1D5Q9BTE7 237 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 DAPK2Q9UIK4 370 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MRPS7Q9Y2R9 242 aaKnown RBP9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CEPT1Q9Y6K0 416 aa9.22□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 GGCTO75223 188 aaKnown RBP9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 NDUFB8O95169 186 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR2C1O95371 312 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HLA-AP01891 365 aaKnown RBP9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IFNA6P05013 189 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PSMB6P28072 239 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RPL27AP46776 148 aaKnown RBP9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CD81P60033 236 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR2B11Q5JQS5 317 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 LGALS14Q8TCE9 139 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SLC25A38Q96DW6 304 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 YIPF6Q96EC8 236 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GPHA2Q96T91 129 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 PLEKHA3Q9HB20 300 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TECRQ9NZ01 308 aaKnown RBP9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FBXL7Q9UJT9 491 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 SPATA2Q9UM82 520 aa9.21□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 IGLV11-55A0A075B6I3 123 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TMEM213A2RRL7 107 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 A8MWP6 167 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RBFOX2O43251 390 aaKnown RBP eCLIP9.2□□□□□ -0.942e-6■■■□□ 15.3
MSH5-SAPCD1-205ENST00000476085 AREGP15514 252 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CBLN1P23435 193 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 GNG2P59768 71 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 MXD1Q05195 221 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 POU2AF1Q16633 256 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HOGA1Q86XE5 327 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 DEFB125Q8N687 156 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 OR5H6Q8NGV6 325 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TCTEX1D2Q8WW35 142 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 MRPS26Q9BYN8 205 aaKnown RBP9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RETNQ9HD89 108 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CCL28Q9NRJ3 127 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 RHBDL2Q9NX52 303 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 BET1LQ9NYM9 111 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 TAS2R8Q9NYW2 309 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 ETV7Q9Y603 341 aa9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 EPPK1P58107 5090 aaKnown RBP9.2□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYH2 397 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 A6NJ64 397 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 HRASP01112 189 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 FGF2P09038 288 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 CLEC2LP0C7M8 214 aa9.19□□□□□ -0.94
MSH5-SAPCD1-205ENST00000476085 C8orf88P0DMB2 117 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms