RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 KCNMB1Q16558 191 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 DEFB127Q9H1M4 99 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 NUP98P52948 1817 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 K7N7A8 449 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 NKX2-2O95096 273 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 GGTLC2Q14390 218 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF48Q96MX3 618 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-214ENST00000620676 RPP25Q9BUL9 199 aaKnown RBP4.31□□□□□ -1.72
VPS13D-214ENST00000620676 IGLV3-16A0A075B6K0 115 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 NABP2Q9BQ15 211 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 TMPRSS3P57727 454 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 SMIM17P0DL12 118 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 FAM71F2Q6NXP2 309 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF501Q96CX3 271 aaPredicted RBP4.31□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF391Q9UJN7 358 aa4.31□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM30CPA0ZSE6 113 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RARRES3Q9UL19 164 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 PLCH1Q4KWH8 1693 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ATG4DQ86TL0 474 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SMIM20Q8N5G0 67 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 VSTM2AQ8TAG5 236 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RNASEH2CQ8TDP1 164 aaKnown RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 IGKV3-7A0A075B6H7 116 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 FCGR2BP31994 310 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 CLDN15P56746 228 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 LPAL2Q16609 132 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 CCDC88CQ9P219 2028 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM189A5PLL7 270 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 MEF2CQ06413 473 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 MIR17HGQ75NE6 70 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 PLXDC1Q8IUK5 500 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 OCC1Q8TAD7 63 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 EDA2RQ9HAV5 297 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 C10orf91Q5T1B1 145 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 GRAMD2BQ96HH9 432 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RTL8AQ9BWD3 113 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TP73-AS1Q9UF72 201 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SYNGR1O43759 233 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ZG16O60844 167 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RABIFP47224 123 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RPL31P62899 125 aaKnown RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 A0A1W2PS18 150 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 DCDP81605 110 aaKnown RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 GAGE2BQ13066 116 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 GAGE2EQ4V326 116 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SPSB1Q96BD6 273 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 GAGE2DQ9UEU5 116 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 KLF2Q9Y5W3 355 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 J3QRE1 110 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SNRNP200O75643 2136 aaKnown RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 CYB561P49447 251 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM144Q7Z5S9 345 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ARPC1AQ92747 370 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 WDR34Q96EX3 536 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TXNDC17Q9BRA2 123 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 AMMECR1Q9Y4X0 333 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RUNX3Q13761 415 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 LRRC75BQ2VPJ9 315 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 VSTM2LQ96N03 204 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ALG1L2C9J202 215 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 CKS2P33552 79 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM52BQ4KMG9 183 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 OR2Z1Q8NG97 314 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 PP6455Q8WZ26 134 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 PTX4Q96A99 478 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SCN3AQ9NY46 2000 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 MT-ND6P03923 174 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 HERVK_113P61574 105 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 RND1Q92730 232 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM265A0A087WTH1 108 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 TIMP3P35625 211 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 KIR2DL2P43627 348 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 VEGFBP49765 207 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 SUPT4H1P63272 117 aaKnown RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 HCP5Q6MZN7 132 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 NHSL1Q5SYE7 1610 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 IGHV1-69-2A0A0G2JMI3 117 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 FRG2CA6NGY1 282 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 LIPT2A6NK58 231 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 HIST1H1AQ02539 215 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF141Q15928 474 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 PEAR1Q5VY43 1037 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-214ENST00000620676 NUP37Q8NFH4 326 aa4.3□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF56Q15929 161 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 HLA-DQA1P01909 254 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 IL6RP08887 468 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TNXAQ16473 311 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 TBC1D28Q2M2D7 210 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SPATA31B1PQ5VZV4 182 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 LRRC61Q9BV99 259 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.29□□□□□ -1.721e-6■■■■□ 25.7
VPS13D-214ENST00000620676 K7EP13 123 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 PLA2G5P39877 138 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SLC37A2Q8TED4 501 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 FOXL1Q12952 345 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 ESPL1Q14674 2120 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 UBALD2Q8IYN6 164 aa4.29□□□□□ -1.72
VPS13D-214ENST00000620676 BCL6BQ8N143 479 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-214ENST00000620676 SERTM1A2A2V5 107 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms